Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14701 Brassica carinata HOM05D007057 ORTHO05D008878 6.8e-49 197.2 114 100.0
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 8.1e-42 173.7 106 95.3
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 1.4e-41 172.9 106 92.5
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 3.1e-41 171.8 106 96.2
BcaC03g14699 Brassica carinata HOM05D007057 ORTHO05D008878 1.3e-39 166.4 102 95.1
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 1.7e-39 166.0 106 91.5
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 2.9e-39 165.2 106 90.6
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 1.9e-38 162.5 106 85.8
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 3.3e-35 151.8 106 82.1
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 7.3e-35 150.6 106 87.7
BcaB05g24109 Brassica carinata HOM05D007057 ORTHO05D008878 1.6e-34 149.4 114 82.5
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 2.3e-33 145.6 106 85.8
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 2.3e-33 145.6 106 85.8
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 2.3e-33 145.6 106 84.0
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 1.5e-32 142.9 106 84.9
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 1.5e-32 142.9 106 84.9
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 9.3e-22 107.1 106 69.8
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 5.3e-17 91.3 104 60.6
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 6.9e-17 90.9 105 59.0
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 7.6e-16 87.4 105 58.1
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 1.7e-15 86.3 106 58.5
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 2.2e-15 85.9 105 56.2
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 2.2e-15 85.9 106 56.6
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 2.2e-15 85.9 105 53.3
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 3.8e-15 85.1 106 56.6
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 4.9e-15 84.7 106 57.5
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 6.4e-15 84.3 106 50.0
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 8.4e-15 84.0 105 52.4
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 1.1e-14 83.6 105 52.4
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 1.1e-14 83.6 106 55.7
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 1.1e-14 83.6 105 56.2
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 1.4e-14 83.2 105 57.1
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 1.9e-14 82.8 106 50.9
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.9e-14 82.8 106 50.9
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.9e-14 82.8 106 50.9
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.9e-14 82.8 106 50.9
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.9e-14 82.8 106 50.9
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 3.2e-14 82.0 105 52.4
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 4.2e-14 81.6 105 55.2
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 5.4e-14 81.3 106 56.6
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 7.1e-14 80.9 106 55.7
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 9.3e-14 80.5 105 56.2
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 9.3e-14 80.5 105 56.2
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 9.3e-14 80.5 106 55.7
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 1.6e-13 79.7 106 50.0
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.1e-13 79.3 106 48.1
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 2.1e-13 79.3 106 53.8
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 2.1e-13 79.3 106 54.7
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 3.5e-13 78.6 106 55.7
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 4.6e-13 78.2 105 51.4
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 4.6e-13 78.2 106 53.8
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 4.6e-13 78.2 105 54.3
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 6.0e-13 77.8 105 50.5
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 2.3e-12 75.9 105 53.3
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 2.5e-11 72.4 106 50.0
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 1.6e-10 69.7 44 70.5
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 1.6e-10 69.7 106 46.2
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 4.8e-10 68.2 45 68.9
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 4.8e-10 68.2 49 67.3
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 8.1e-10 67.4 106 50.0
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 4.5e-08 61.6 106 49.1
Manes.07G072338 Manihot esculenta HOM05D000033 ORTHO05D002493 7.6e-08 60.8 66 48.5
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 1.7e-07 59.7 107 49.5
FvH4_5g14410 Fragaria vesca HOM05D000094 ORTHO05D003883 2.9e-07 58.9 59 52.5
FAN18G3591 Fragaria x ananassa HOM05D000094 ORTHO05D003883 2.9e-07 58.9 59 52.5
Ciclev10024479m.g Citrus clementina HOM05D000132 ORTHO05D000058 4.9e-07 58.2 65 44.6
arahy.Tifrunner.gnm1.ann1.A1HR66 Arachis hypogaea HOM05D000094 ORTHO05D003883 1.1e-06 57.0 62 50.0
arahy.Tifrunner.gnm1.ann1.SDCR6H Arachis hypogaea HOM05D000094 ORTHO05D003883 1.1e-06 57.0 62 50.0
Nitab4.5_0006300g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.1e-06 57.0 109 45.9
TPR.G6258 Trifolium pratense HOM05D000071 ORTHO05D000029 1.4e-06 56.6 65 46.2
VMungo1309G2047 Vigna mungo HOM05D000094 ORTHO05D004969 1.4e-06 56.6 68 41.2
Cc00_g15340 Coffea canephora HOM05D020204 ORTHO05D000010 1.9e-06 56.2 73 38.4
TPR.G6238 Trifolium pratense HOM05D000071 ORTHO05D000029 1.9e-06 56.2 65 46.2
PGR031G2526 Punica granatum HOM05D000053 ORTHO05D000448 2.4e-06 55.8 72 45.8
Carub.0002s2099 Capsella rubella HOM05D000094 ORTHO05D003883 3.2e-06 55.5 62 45.2
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 3.2e-06 55.5 73 45.2
BraA02t06915Z Brassica rapa HOM05D000094 ORTHO05D033811 4.2e-06 55.1 65 44.6
CAN.G257.10 Capsicum annuum HOM05D000021 ORTHO05D000010 5.5e-06 54.7 71 39.4
Sopen08g020100 Solanum pennellii HOM05D000029 ORTHO05D001072 5.5e-06 54.7 59 49.2
Ciclev10010520m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.1e-06 54.3 61 45.9
Haze_05756 Corylus avellana HOM05D000053 ORTHO05D000448 7.1e-06 54.3 63 41.3
HanXRQChr15g0464111 Helianthus annuus HOM05D000053 ORTHO05D000448 7.1e-06 54.3 73 46.6
Nitab4.5_0029367g0020 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.1e-06 54.3 71 38.0
VMungo1383G0889 Vigna mungo HOM05D000311 ORTHO05D048770 7.1e-06 54.3 70 41.4
Lj5C645T2 Lonicera japonica HOM05D000053 ORTHO05D000448 9.3e-06 53.9 66 45.5


User provided reference genes

Program Settings