Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 4.3e-144 514.6 254 100.0
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 2.7e-77 292.7 205 75.6
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 4.5e-77 292.0 205 75.6
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 4.5e-77 292.0 212 74.1
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 2.2e-76 289.7 205 74.1
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 3.6e-74 282.3 205 72.7
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.0e-73 280.8 204 73.0
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 3.0e-73 279.3 204 72.5
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 2.8e-71 272.7 205 69.8
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 4.8e-71 271.9 205 69.3
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.1e-70 270.8 205 69.3
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 9.4e-67 257.7 205 66.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.0e-60 237.7 201 63.7
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.3e-60 236.5 230 57.0
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 5.6e-59 231.9 193 64.8
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.6e-58 230.3 191 60.2
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 3.6e-58 229.2 193 63.7
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 8.0e-58 228.0 200 60.5
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.0e-57 227.6 201 57.7
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 1.4e-57 227.3 191 63.4
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.4e-57 227.3 204 57.8
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 1.8e-57 226.9 193 62.7
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 4.0e-57 225.7 193 62.2
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 4.0e-57 225.7 201 59.2
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 8.9e-57 224.6 200 60.0
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 8.9e-57 224.6 201 58.7
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 8.9e-57 224.6 204 58.3
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 8.9e-57 224.6 193 62.2
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 2.6e-56 223.0 207 60.4
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.6e-56 223.0 248 51.2
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 3.4e-56 222.6 201 58.2
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.4e-56 222.2 209 56.0
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 1.3e-55 220.7 205 56.6
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.7e-55 220.3 205 57.1
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 2.2e-55 219.9 210 56.2
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 4.9e-55 218.8 210 56.7
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 4.9e-55 218.8 205 55.6
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 6.4e-55 218.4 200 58.0
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 6.4e-55 218.4 207 56.0
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 8.3e-55 218.0 193 58.0
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 1.4e-54 217.2 201 57.7
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 4.1e-54 215.7 198 56.1
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.0e-54 214.9 217 53.5
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 9.2e-54 214.5 203 55.2
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 1.6e-53 213.8 207 56.0
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.6e-53 213.8 198 55.6
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 2.0e-53 213.4 202 56.4
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.7e-53 213.0 201 56.7
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 2.7e-53 213.0 205 57.6
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 2.7e-53 213.0 209 55.0
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 2.7e-53 213.0 284 45.1
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.5e-53 212.6 243 49.4
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 3.5e-53 212.6 192 58.3
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 4.6e-53 212.2 225 52.0
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 4.6e-53 212.2 198 55.6
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 5.9e-53 211.8 226 50.9
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.3e-52 210.7 217 53.0
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 2.3e-52 209.9 198 55.1
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 5.0e-52 208.8 193 57.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 6.6e-52 208.4 198 55.6
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 6.6e-52 208.4 230 49.6
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 2.5e-51 206.5 205 55.1
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 9.5e-51 204.5 247 48.6
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 9.5e-51 204.5 224 51.3
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 1.6e-50 203.8 198 52.0
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.6e-50 203.8 202 51.0
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 3.6e-50 202.6 182 57.1
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 3.6e-50 202.6 210 53.8
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 4.7e-50 202.2 207 53.6
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 6.2e-50 201.8 210 51.4
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 8.0e-50 201.4 240 48.3
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 8.0e-50 201.4 210 53.8
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 3.1e-49 199.5 261 49.8
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 3.1e-49 199.5 157 66.2
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 3.4e-48 196.1 201 52.7
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 4.4e-48 195.7 206 54.4
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 4.4e-48 195.7 201 52.7
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 2.2e-47 193.4 200 54.0
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 2.4e-46 189.9 208 51.0
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 2.4e-46 189.9 226 46.5
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 5.4e-46 188.7 246 45.9
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 7.0e-46 188.3 195 51.8
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 9.2e-46 188.0 190 54.7
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 1.2e-45 187.6 203 50.7
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 1.2e-45 187.6 202 50.5
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 2.7e-45 186.4 246 45.5
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 6.0e-45 185.3 199 50.8
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 1.0e-44 184.5 202 52.0
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 3.9e-44 182.6 199 49.2
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 1.5e-43 180.6 206 48.1
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 9.5e-43 177.9 201 49.8
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.2e-42 177.6 170 58.2
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 1.6e-42 177.2 211 48.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 4.0e-41 172.6 207 46.9
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 2.6e-40 169.9 187 49.7
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.4e-40 169.5 201 47.3
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 1.3e-39 167.5 206 47.6
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 1.9e-38 163.7 204 45.6
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 2.4e-38 163.3 124 68.5
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.4e-38 163.3 130 66.2
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.6e-37 160.6 204 50.0
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 3.0e-36 156.4 201 48.8
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.9e-35 153.7 157 53.5
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.3e-35 152.9 86 87.2
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 4.4e-32 142.5 89 74.2
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 3.8e-31 139.4 88 77.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 3.2e-30 136.3 192 42.2
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 9.2e-30 134.8 211 39.3
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.7e-29 133.3 175 42.9
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 4.7e-26 122.5 121 57.9
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 3.4e-24 116.3 225 34.7
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.3e-20 103.6 267 29.2
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 9.0e-17 91.7 78 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.2e-16 91.3 247 28.3
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 1.3e-15 87.8 132 40.2
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 4.9e-15 85.9 111 44.1
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 2.3e-12 77.0 116 42.2
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 8.1e-10 68.6 82 42.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 9.0e-09 65.1 70 45.7
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 3.4e-08 63.2 156 29.5
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 4.5e-08 62.8 63 47.6
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 7.6e-08 62.0 96 40.6
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 9.9e-08 61.6 79 46.8
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.2e-07 60.5 62 50.0
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 2.9e-07 60.1 62 46.8
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.9e-07 59.3 62 48.4


User provided reference genes

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