Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 1.5e-153 546.2 289 100.0
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 1.4e-151 539.7 289 98.6
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 1.4e-151 539.7 289 98.6
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 7.3e-148 527.3 289 96.2
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 1.6e-142 509.6 269 98.9
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 1.3e-141 506.5 269 98.5
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 1.2e-134 483.4 286 89.5
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 9.5e-132 473.8 287 85.4
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 2.1e-131 472.6 277 87.4
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 4.0e-130 468.4 288 85.1
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 2.9e-128 462.2 288 84.0
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 3.9e-125 451.8 286 80.1
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 4.9e-120 434.9 248 87.9
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 2.6e-113 412.5 293 73.7
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 4.3e-100 368.6 273 70.7
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 7.6e-97 357.8 305 65.2
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 6.5e-96 354.8 283 68.2
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.4e-95 353.6 254 70.9
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 2.5e-95 352.8 275 66.5
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 7.1e-95 351.3 307 63.5
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 7.1e-95 351.3 255 68.2
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 2.7e-94 349.4 304 61.5
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.5e-94 349.0 257 68.9
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 6.0e-94 348.2 269 67.3
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 7.9e-94 347.8 300 63.7
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 7.9e-94 347.8 254 68.9
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.3e-93 347.1 255 68.2
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.3e-93 347.1 289 64.4
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 3.0e-93 345.9 258 68.6
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 5.1e-93 345.1 265 67.2
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 1.5e-92 343.6 298 63.4
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.9e-92 343.2 330 60.0
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 4.8e-91 338.6 246 67.5
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.4e-90 337.0 256 66.4
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.8e-90 336.7 275 64.0
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 2.4e-90 336.3 300 61.0
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 3.1e-90 335.9 257 66.1
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 6.9e-90 334.7 256 66.0
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 9.0e-90 334.3 257 65.8
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.5e-89 333.6 257 66.1
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 1.5e-89 333.6 251 64.9
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 2.0e-89 333.2 271 65.3
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.6e-89 332.8 271 65.3
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 4.5e-89 332.0 312 59.0
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 5.9e-89 331.6 283 60.8
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 5.9e-89 331.6 300 60.3
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.0e-88 330.9 232 71.6
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 1.0e-88 330.9 259 64.9
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.0e-88 330.9 253 66.0
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 1.0e-88 330.9 251 65.3
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 1.7e-88 330.1 235 68.1
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 1.7e-88 330.1 255 65.9
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 1.7e-88 330.1 243 65.8
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.7e-88 330.1 256 64.8
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 5.0e-88 328.6 302 59.3
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 6.5e-88 328.2 251 65.3
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 2.5e-87 326.2 288 62.5
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 9.4e-87 324.3 256 64.1
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 1.2e-86 323.9 294 59.2
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 1.6e-86 323.6 299 58.5
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 2.7e-86 322.8 312 57.7
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 3.6e-86 322.4 299 57.5
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 4.6e-86 322.0 301 56.8
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 7.9e-86 321.2 304 59.2
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 1.0e-85 320.9 247 65.6
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.8e-85 320.1 259 62.5
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 1.8e-85 320.1 227 70.0
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 1.8e-85 320.1 236 67.4
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 1.8e-85 320.1 258 64.3
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 2.3e-85 319.7 248 63.7
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 2.3e-85 319.7 254 64.6
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 2.3e-85 319.7 259 63.7
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 2.3e-85 319.7 249 64.7
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 3.9e-85 318.9 258 64.0
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.5e-84 317.0 258 63.6
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 1.5e-84 317.0 249 64.3
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 2.5e-84 316.2 309 57.0
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 2.5e-84 316.2 256 62.9
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 1.3e-83 313.9 256 60.9
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 3.7e-83 312.4 249 63.5
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 2.4e-82 309.7 286 58.0
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.2e-81 307.4 285 57.5
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 6.5e-80 301.6 225 67.6
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 8.5e-80 301.2 223 68.2
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.5e-79 299.7 224 67.9
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 3.6e-78 295.8 262 62.2
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 1.4e-77 293.9 307 54.7
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 6.7e-77 291.6 286 57.0
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 8.8e-77 291.2 277 55.6
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 2.0e-76 290.0 206 68.9
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 9.1e-74 281.2 223 64.1
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 7.7e-73 278.1 242 60.3
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 2.9e-72 276.2 261 60.5
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.9e-71 273.5 287 54.4
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 1.9e-71 273.5 254 58.7
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 4.2e-71 272.3 227 62.6
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.6e-70 270.4 227 62.1
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 4.7e-70 268.9 227 62.1
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 8.0e-70 268.1 293 51.2
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 5.3e-66 255.4 179 71.5
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 9.1e-66 254.6 247 52.6
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 8.5e-64 248.1 237 52.3
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 6.1e-62 241.9 248 48.8
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.5e-60 237.3 235 55.3
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 7.5e-60 235.0 229 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 4.0e-53 212.6 243 49.8
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 2.4e-50 203.4 216 49.1
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 7.0e-50 201.8 148 70.3
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 6.6e-48 195.3 178 56.2
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 4.4e-44 182.6 224 46.0
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 1.7e-24 117.5 223 34.5
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.3e-19 101.3 86 60.5
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 4.9e-19 99.4 121 47.9
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 2.3e-16 90.5 226 29.6
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 1.6e-14 84.3 97 49.5
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 1.6e-14 84.3 97 49.5
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 7.6e-12 75.5 228 28.9


User provided reference genes

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