Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 1.3e-227 792.7 409 100.0
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 8.5e-219 763.5 400 98.5
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 5.5e-218 760.8 394 99.2
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 2.7e-217 758.4 400 97.8
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 2.7e-217 758.4 394 99.0
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 9.1e-213 743.4 400 96.0
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.8e-208 729.2 394 95.4
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.8e-208 729.2 394 95.4
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 9.5e-202 706.8 400 90.8
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 8.9e-200 700.3 400 90.5
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.9e-197 692.6 400 89.8
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 1.9e-194 682.6 400 88.5
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.9e-182 642.1 411 81.0
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 4.2e-157 558.5 396 74.2
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 3.6e-124 449.1 400 57.8
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 7.0e-120 434.9 400 56.0
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 2.2e-118 429.9 416 55.0
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 6.5e-118 428.3 401 56.4
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 8.5e-118 427.9 401 56.6
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 1.5e-117 427.2 400 54.8
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 1.9e-117 426.8 396 55.3
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 7.2e-117 424.9 400 54.8
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 7.2e-117 424.9 404 54.5
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.7e-116 422.9 400 54.8
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 8.0e-116 421.4 408 54.2
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 3.0e-115 419.5 400 54.8
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 3.0e-115 419.5 378 57.1
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 3.9e-115 419.1 401 54.9
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 6.7e-115 418.3 400 56.0
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 2.6e-114 416.4 399 53.9
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 7.4e-114 414.8 403 53.3
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.7e-113 413.7 400 53.8
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 3.1e-112 409.5 402 53.0
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 3.5e-111 406.0 398 54.0
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 1.1e-109 401.0 405 53.1
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 2.5e-109 399.8 385 53.0
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 4.2e-109 399.1 388 53.9
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 1.6e-108 397.1 386 53.4
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 2.1e-108 396.7 396 53.3
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 2.7e-108 396.4 417 51.3
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 3.4e-106 389.4 402 51.7
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 2.8e-105 386.3 379 54.4
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 3.7e-105 386.0 416 50.0
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 8.3e-105 384.8 384 53.9
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 5.3e-104 382.1 396 50.3
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 7.0e-104 381.7 414 50.2
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 2.7e-103 379.8 416 48.1
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 3.5e-103 379.4 416 49.8
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 5.9e-103 378.6 409 50.4
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 5.0e-102 375.6 389 50.6
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 1.9e-101 373.6 409 49.1
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 2.5e-101 373.2 402 48.0
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 3.2e-101 372.9 385 49.4
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 5.5e-101 372.1 384 50.0
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 8.0e-100 368.2 391 48.8
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.0e-99 367.9 367 53.7
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.4e-99 367.5 383 49.9
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 1.8e-99 367.1 383 49.1
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 3.0e-99 366.3 395 48.1
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 4.0e-99 365.9 372 49.5
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 6.8e-99 365.2 383 48.3
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 6.8e-99 365.2 383 48.3
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 1.5e-98 364.0 397 46.3
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 2.0e-98 363.6 383 48.0
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 2.6e-98 363.2 409 46.9
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 2.6e-98 363.2 382 49.0
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 9.8e-98 361.3 383 48.6
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 1.3e-97 360.9 383 48.6
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 1.7e-97 360.5 414 45.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.7e-97 359.4 379 51.5
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 3.7e-97 359.4 402 48.0
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 8.3e-97 358.2 391 49.9
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 8.3e-97 358.2 377 49.1
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 2.4e-96 356.7 397 48.4
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.4e-96 356.7 396 49.5
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 4.1e-96 355.9 399 49.6
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 5.4e-96 355.5 382 46.6
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 5.4e-96 355.5 388 48.7
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.0e-94 351.3 385 48.3
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 3.6e-92 342.8 412 44.4
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 8.0e-92 341.7 412 45.1
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 8.9e-91 338.2 401 45.1
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 9.8e-90 334.7 397 45.1
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 1.2e-87 327.8 396 47.7
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 4.5e-87 325.9 408 42.9
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 1.3e-86 324.3 401 45.1
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 3.9e-86 322.8 399 44.6
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 1.9e-85 320.5 368 47.6
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 7.3e-85 318.5 384 43.2
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 6.1e-84 315.5 403 41.4
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.4e-83 314.3 332 49.4
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 4.0e-83 312.8 382 44.8
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 5.8e-82 308.9 383 44.9
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 9.8e-82 308.1 381 42.3
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 2.4e-80 303.5 172 93.0
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 9.2e-80 301.6 352 46.9
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 3.4e-74 283.1 393 39.9
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 1.2e-71 274.6 302 48.3
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 7.8e-71 271.9 496 35.1
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 1.0e-70 271.6 402 39.1
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 2.3e-70 270.4 281 47.7
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 2.5e-69 266.9 380 40.5
Cpa.g.sc18.189 Carica papaya HOM05D004825 ORTHO05D005415 6.2e-68 262.3 250 54.8
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 8.9e-67 258.5 438 38.1
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 8.3e-65 251.9 291 47.1
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 1.7e-62 244.2 257 54.9
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 6.6e-62 242.3 654 28.6
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.5e-61 240.4 274 48.9
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 7.3e-61 238.8 400 36.8
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 1.6e-60 237.7 318 41.5
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 2.4e-59 233.8 338 40.2
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 7.6e-58 228.8 236 55.1
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 6.0e-55 219.2 379 32.7
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.8e-51 207.6 247 47.8
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.5e-50 204.5 238 47.9
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 1.5e-50 204.5 238 51.3
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 3.5e-47 193.4 147 60.5
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 4.6e-47 193.0 220 50.5
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 4.8e-44 183.0 193 52.3
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 4.9e-41 172.9 242 45.5
Mapoly0072s0017 Marchantia polymorpha HOM05D004825 ORTHO05D005415 1.2e-39 168.3 375 29.3
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 2.3e-38 164.1 366 29.0
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 6.2e-36 156.0 163 50.9
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 5.3e-35 152.9 145 50.3
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 2.0e-34 151.0 135 51.9
Pp3c8_14790 Physcomitrium patens HOM05D004825 ORTHO05D005415 3.4e-34 150.2 274 28.5
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 5.0e-25 119.8 103 55.3
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 3.8e-17 93.6 89 51.7
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 2.7e-15 87.4 70 58.6
Nitab4.5_0004158g0050 Nicotiana tabacum HOM05D004825 ORTHO05D005415 4.6e-15 86.7 59 59.3
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 1.4e-14 85.1 87 46.0
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 8.8e-14 82.4 94 41.5
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.1e-13 82.0 77 48.1
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 2.5e-13 80.9 73 49.3
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 5.7e-13 79.7 87 43.7
Glyma.09G252466 Glycine max HOM05D004825 ORTHO05D005415 1.4e-11 75.1 80 56.2
Aa31LG2G19680 Aethionema arabicum HOM05D003055 ORTHO05D005415 5.3e-11 73.2 55 56.4
Aa31LG7G1810 Aethionema arabicum HOM05D003055 ORTHO05D005415 5.3e-11 73.2 55 56.4
MCO16G533 Micromonas commoda HOM05D004825 ORTHO05D005415 3.2e-08 63.9 139 27.3
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 2.7e-07 60.8 212 30.2


User provided reference genes

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