Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.4e-139 498.8 253 100.0
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.9e-137 491.5 253 98.0
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.7e-135 484.6 249 98.0
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 6.4e-132 474.2 253 96.0
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 6.4e-132 474.2 253 96.0
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 4.7e-127 458.0 256 92.6
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-118 429.9 255 87.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-118 429.9 255 87.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-118 429.9 255 87.1
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.9e-115 419.5 256 84.8
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.4e-109 398.7 259 81.5
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.3e-108 396.7 251 82.1
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 7.1e-107 391.0 255 81.6
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.9e-105 385.2 255 80.0
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 8.7e-89 330.9 257 69.6
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 2.0e-85 319.7 256 68.8
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 3.2e-75 285.8 248 60.9
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 6.3e-71 271.6 247 59.1
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 3.1e-70 269.2 252 58.7
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.3e-68 263.8 251 57.4
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.3e-68 263.8 251 57.4
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.8e-68 262.3 248 57.7
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 6.1e-66 255.0 254 55.1
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.8e-65 253.4 227 58.6
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 3.0e-65 252.7 247 55.9
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.6e-64 249.6 255 54.1
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 6.3e-63 245.0 265 53.2
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.4e-62 243.8 258 53.9
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.8e-62 243.4 253 53.8
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 2.5e-59 233.0 250 51.2
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 4.2e-59 232.3 219 56.6
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 4.2e-59 232.3 219 56.6
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 4.2e-59 232.3 217 57.6
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 5.5e-59 231.9 262 50.4
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.2e-58 230.7 219 56.6
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.1e-58 229.9 255 51.4
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 6.1e-58 228.4 216 55.6
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 8.0e-58 228.0 225 54.2
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.8e-57 226.9 225 53.3
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 1.8e-57 226.9 230 50.4
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.2e-57 225.3 208 56.7
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 6.8e-57 224.9 256 50.4
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 8.8e-57 224.6 230 51.3
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.5e-56 223.8 267 48.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 3.4e-56 222.6 255 49.8
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 7.5e-56 221.5 247 50.2
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.7e-55 220.3 232 52.2
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 6.3e-55 218.4 247 50.2
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.8e-54 216.9 246 47.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 1.8e-54 216.9 231 49.8
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.4e-54 216.5 232 52.2
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.4e-54 215.3 255 49.8
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.3e-52 210.7 234 50.4
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.0e-52 208.8 240 48.8
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 5.5e-51 205.3 260 44.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 3.6e-50 202.6 250 46.8
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.1e-50 201.8 155 63.2
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.0e-49 201.1 274 42.3
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 4.0e-49 199.1 211 52.1
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 5.2e-49 198.7 232 49.1
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 3.4e-48 196.1 211 51.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 9.8e-48 194.5 232 46.6
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.7e-47 192.6 225 47.1
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.3e-47 191.4 208 50.0
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.1e-46 189.5 208 49.5
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 7.0e-46 188.3 247 45.7
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 7.0e-46 188.3 172 57.0
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 5.9e-45 185.3 234 46.2
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.9e-44 183.0 251 41.0
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.3e-43 179.5 220 46.4
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 4.7e-42 175.6 174 53.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 4.7e-42 175.6 174 53.4
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.0e-41 174.5 153 58.2
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 3.0e-41 172.9 248 39.5
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 6.8e-41 171.8 248 43.1
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 8.9e-41 171.4 247 39.3
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 8.9e-41 171.4 216 45.4
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.7e-39 166.0 151 54.3
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 4.9e-39 165.6 146 56.2
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 4.9e-39 165.6 138 57.2
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 6.4e-39 165.2 153 58.2
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 6.4e-39 165.2 266 39.1
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.4e-38 164.1 151 53.6
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.4e-38 164.1 242 42.6
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 4.1e-38 162.5 202 46.5
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 7.0e-38 161.8 157 51.0
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.2e-37 161.0 228 42.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.0e-37 160.2 172 48.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 3.5e-37 159.5 142 56.3
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.8e-37 158.3 164 49.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 1.0e-36 157.9 155 54.8
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 2.3e-36 156.8 141 56.0
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 3.0e-36 156.4 137 59.1
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 3.0e-36 156.4 147 51.7
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 8.6e-36 154.8 140 56.4
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.5e-35 154.1 142 57.0
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 3.3e-35 152.9 142 57.0
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 4.3e-35 152.5 167 47.3
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 9.5e-35 151.4 203 42.9
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 1.6e-34 150.6 142 54.9
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 2.1e-34 150.2 209 40.7
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 8.0e-34 148.3 153 51.0
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 3.1e-33 146.4 142 52.8
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 3.1e-33 146.4 139 54.0
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.2e-32 144.4 153 49.7
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.0e-32 143.7 162 51.2
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.7e-31 139.4 215 40.5
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.9e-30 137.1 151 48.3
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 3.2e-30 136.3 146 48.6
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.0e-29 133.7 161 44.7
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 3.3e-27 126.3 236 33.9
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.8e-25 120.6 90 62.2
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 4.4e-24 115.9 231 33.8
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 9.2e-22 108.2 156 37.8
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.2e-21 107.8 78 60.3
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 2.4e-17 93.6 77 63.6
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 4.9e-15 85.9 62 64.5
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 5.1e-12 75.9 77 46.8
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.4e-09 67.8 143 28.7
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.8e-09 67.4 91 37.4
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.1e-06 58.2 67 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 5.4e-06 55.8 64 39.1


User provided reference genes

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