Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 1.1e-138 496.5 229 100.0
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 4.3e-135 484.6 229 98.7
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 2.1e-134 482.3 229 97.8
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 2.0e-132 475.7 229 96.9
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.1e-130 469.9 234 94.4
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 7.8e-121 437.2 222 91.0
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 8.1e-118 427.2 230 88.7
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 4.2e-114 414.8 233 86.7
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 4.2e-114 414.8 233 86.7
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.0e-104 383.6 224 78.6
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 9.6e-103 377.1 195 93.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 4.6e-97 358.2 221 72.4
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 5.7e-95 351.3 216 74.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 5.7e-95 351.3 223 69.5
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 2.2e-94 349.4 190 84.2
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 2.2e-94 349.4 223 69.1
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 4.8e-94 348.2 187 87.7
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 8.2e-94 347.4 221 67.9
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.4e-93 345.9 223 69.1
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.4e-93 345.9 223 69.1
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 9.0e-93 344.0 228 67.5
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 1.2e-92 343.6 222 69.4
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.2e-92 343.6 187 84.5
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 4.5e-92 341.7 226 69.5
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 7.7e-92 340.9 187 85.6
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 2.2e-91 339.3 217 69.1
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 2.9e-91 339.0 223 69.5
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 5.0e-91 338.2 225 67.6
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 6.5e-91 337.8 187 85.6
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 6.5e-91 337.8 224 67.9
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.4e-90 336.7 220 70.0
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 1.9e-90 336.3 218 69.3
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.9e-90 336.3 221 69.2
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 2.5e-90 335.9 220 68.6
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 2.5e-90 335.9 230 67.0
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 5.5e-90 334.7 219 69.4
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 9.4e-90 334.0 222 67.1
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 9.4e-90 334.0 216 68.5
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.6e-89 333.2 219 67.6
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 2.1e-89 332.8 223 67.7
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.7e-89 332.4 216 69.4
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 2.7e-89 332.4 216 70.4
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 3.6e-89 332.0 216 69.4
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 4.6e-89 331.6 221 67.9
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 4.6e-89 331.6 230 66.5
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 7.9e-89 330.9 218 68.8
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 3.9e-88 328.6 217 67.3
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 8.8e-88 327.4 214 70.1
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 1.1e-87 327.0 231 64.9
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 3.3e-87 325.5 220 65.9
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 3.3e-87 325.5 222 66.7
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 4.3e-87 325.1 223 65.9
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 5.7e-87 324.7 216 67.1
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 5.7e-87 324.7 220 66.4
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.3e-86 323.6 220 65.9
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 1.7e-86 323.2 220 65.9
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 2.2e-86 322.8 233 66.5
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 3.7e-86 322.0 220 65.0
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 8.2e-86 320.9 221 66.5
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.1e-85 320.5 220 67.7
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 1.4e-85 320.1 219 66.7
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 1.8e-85 319.7 220 66.4
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 1.8e-85 319.7 220 65.5
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.1e-85 318.9 220 67.3
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 6.9e-85 317.8 219 66.2
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.5e-84 316.6 216 67.6
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 2.0e-84 316.2 221 65.6
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.0e-84 316.2 220 66.4
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 2.2e-83 312.8 223 63.7
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 2.2e-83 312.8 260 57.7
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 6.5e-83 311.2 219 64.4
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 1.1e-82 310.5 219 63.9
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 1.9e-82 309.7 215 65.6
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 2.5e-82 309.3 221 63.8
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 3.2e-82 308.9 221 65.6
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 4.2e-82 308.5 235 62.6
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 2.7e-81 305.8 221 62.0
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.4e-80 303.5 223 65.0
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 1.5e-79 300.1 234 62.0
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 1.5e-79 300.1 225 61.3
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 2.0e-79 299.7 289 52.6
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.6e-79 299.3 193 70.5
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.3e-78 297.0 187 70.6
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 1.3e-78 297.0 220 61.4
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 1.7e-78 296.6 228 58.8
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 4.8e-78 295.0 189 72.5
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 2.6e-76 289.3 191 69.1
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 5.9e-76 288.1 220 59.5
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 9.4e-74 280.8 265 53.6
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.7e-73 279.3 193 68.4
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 8.8e-72 274.2 192 64.1
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 8.8e-72 274.2 184 68.5
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 1.5e-71 273.5 201 64.2
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 5.7e-71 271.6 184 67.9
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 5.7e-71 271.6 186 66.7
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 3.1e-69 265.8 189 67.2
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 2.6e-68 262.7 183 67.2
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.0e-67 260.8 197 60.9
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 1.3e-67 260.4 182 65.4
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 1.3e-67 260.4 182 65.4
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 1.3e-67 260.4 214 57.0
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 2.9e-67 259.2 217 61.8
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.2e-66 255.4 219 56.2
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.2e-66 255.4 219 56.2
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 1.2e-65 253.8 185 62.2
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 3.6e-65 252.3 220 56.4
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 3.4e-63 245.7 200 56.0
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 9.7e-63 244.2 194 58.8
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.2e-60 237.3 220 55.5
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 5.0e-59 231.9 191 56.0
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 3.8e-51 205.7 212 44.8
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 8.6e-51 204.5 152 61.8
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 2.8e-49 199.5 133 64.7
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 9.8e-47 191.0 128 67.2
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 5.0e-35 152.1 89 69.7
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 1.2e-33 147.5 77 75.3
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 3.0e-19 99.8 188 38.3
AL8G25960 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 3.6e-09 66.2 36 86.1
CARHR264550 Cardamine hirsuta HOM05D006795 ORTHO05D008573 1.8e-08 63.9 29 89.7
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 2.6e-07 60.1 61 37.7


User provided reference genes

Program Settings