Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 1.9e-53 212.2 108 100.0
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 1.9e-53 212.2 108 100.0
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 2.5e-53 211.8 108 99.1
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 4.5e-50 201.1 108 94.4
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 1.9e-45 185.7 106 89.6
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 8.2e-44 180.3 108 88.9
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 1.4e-43 179.5 111 88.3
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 1.5e-42 176.0 98 90.8
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 4.5e-42 174.5 108 88.9
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 5.8e-42 174.1 107 86.0
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 3.2e-40 168.3 108 86.1
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 4.2e-40 167.9 106 84.0
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.6e-39 166.0 98 86.7
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.1e-39 165.6 108 81.5
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 7.9e-39 163.7 98 85.7
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 7.9e-39 163.7 98 85.7
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 7.9e-39 163.7 98 85.7
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.0e-38 163.3 106 84.9
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 2.2e-36 155.6 112 72.3
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 1.8e-35 152.5 112 69.6
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 6.9e-35 150.6 107 70.1
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 1.5e-34 149.4 111 68.5
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 2.0e-34 149.1 105 71.4
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 3.4e-34 148.3 114 66.7
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.3e-33 146.4 107 69.2
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 2.9e-33 145.2 114 64.9
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 3.8e-33 144.8 111 66.7
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 6.5e-33 144.1 116 64.7
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 6.5e-33 144.1 109 67.9
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.4e-32 142.9 110 66.4
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.9e-32 142.5 114 63.2
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 2.5e-32 142.1 111 64.9
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 2.5e-32 142.1 111 68.5
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 3.2e-32 141.7 111 64.9
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 3.2e-32 141.7 95 71.6
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 3.2e-32 141.7 114 64.9
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 5.5e-32 141.0 108 64.8
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 5.5e-32 141.0 111 68.5
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 5.5e-32 141.0 113 65.5
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 7.2e-32 140.6 102 67.6
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 7.2e-32 140.6 102 69.6
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 7.2e-32 140.6 110 65.5
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 9.3e-32 140.2 95 71.6
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 9.3e-32 140.2 114 64.0
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.2e-31 139.8 113 64.6
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.6e-31 139.4 113 64.6
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.6e-31 139.4 111 64.9
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 2.1e-31 139.0 110 66.4
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.7e-31 138.7 101 68.3
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.7e-31 138.7 111 62.2
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 3.6e-31 138.3 103 70.9
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 4.6e-31 137.9 100 67.0
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 4.6e-31 137.9 111 63.1
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 4.6e-31 137.9 111 62.2
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 4.6e-31 137.9 102 66.7
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 4.6e-31 137.9 102 66.7
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 6.1e-31 137.5 102 66.7
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 7.9e-31 137.1 103 69.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 7.9e-31 137.1 137 56.9
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.0e-30 136.7 111 64.0
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 1.4e-30 136.3 109 65.1
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 1.8e-30 136.0 100 67.0
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 1.8e-30 136.0 103 67.0
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 1.8e-30 136.0 112 66.1
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 2.3e-30 135.6 111 62.2
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 3.0e-30 135.2 101 66.3
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 5.1e-30 134.4 109 65.1
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 5.1e-30 134.4 109 65.1
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 6.7e-30 134.0 103 66.0
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 8.8e-30 133.7 103 66.0
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.1e-29 133.3 108 61.1
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.1e-29 133.3 108 65.7
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.5e-29 132.9 104 65.4
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 1.9e-29 132.5 110 65.5
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-29 132.5 107 64.5
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-29 132.5 107 64.5
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.5e-29 132.1 104 66.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 2.5e-29 132.1 111 64.9
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.3e-29 131.7 110 64.5
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 5.7e-29 131.0 99 66.7
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 5.7e-29 131.0 102 66.7
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 5.7e-29 131.0 107 63.6
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 5.7e-29 131.0 107 63.6
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.3e-28 129.8 102 62.7
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 1.3e-28 129.8 99 65.7
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 1.3e-28 129.8 105 61.9
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 1.7e-28 129.4 72 88.9
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.7e-28 129.4 110 62.7
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.8e-28 128.6 102 61.8
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 2.8e-28 128.6 113 63.7
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 2.8e-28 128.6 110 63.6
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 3.7e-28 128.3 99 63.6
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.7e-28 128.3 110 58.2
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 4.8e-28 127.9 108 61.1
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 4.8e-28 127.9 101 64.4
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.3e-28 127.5 110 62.7
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 6.3e-28 127.5 110 60.0
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.1e-27 126.7 129 53.5
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.4e-27 125.6 102 60.8
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.4e-27 125.6 109 61.5
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 3.1e-27 125.2 107 61.7
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 4.1e-27 124.8 95 68.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 4.1e-27 124.8 102 59.8
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 9.1e-27 123.6 106 57.5
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.5e-26 122.9 105 61.0
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.5e-26 122.9 105 61.0
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.5e-26 122.9 100 63.0
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 2.0e-26 122.5 111 60.4
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.0e-26 122.5 97 63.9
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 2.6e-26 122.1 108 60.2
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 4.5e-26 121.3 102 63.7
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 7.7e-26 120.6 105 61.9
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 1.0e-25 120.2 104 60.6
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 1.0e-25 120.2 108 56.5
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.3e-25 119.8 99 62.6
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 3.8e-25 118.2 99 58.6
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 5.0e-25 117.9 98 62.2
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 1.1e-24 116.7 105 60.0
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 3.6e-23 111.7 105 57.1
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 3.9e-22 108.2 102 52.9
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.2e-20 102.4 81 61.7
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.4e-19 99.8 70 81.4
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 2.2e-17 92.4 56 76.8
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 3.8e-17 91.7 98 53.1
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 5.5e-16 87.8 103 48.5
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 2.3e-14 82.4 102 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 5.2e-14 81.3 100 45.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 6.7e-14 80.9 99 45.5
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 7.4e-13 77.4 61 59.0
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 9.1e-11 70.5 73 45.2
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 9.1e-11 70.5 111 44.1
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 3.8e-09 65.1 74 50.0
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 9.4e-08 60.5 73 50.7
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 1.2e-07 60.1 85 44.7


User provided reference genes

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