Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14503 Brassica carinata HOM05D000607 ORTHO05D010164 3.7e-54 214.9 132 100.0
C02p19420 Brassica napus HOM05D000607 ORTHO05D010164 3.5e-49 198.4 127 97.6
BolC2t08077H Brassica oleracea HOM05D000607 ORTHO05D010164 8.7e-48 193.7 127 95.3
C02p19470 Brassica napus HOM05D000607 ORTHO05D010164 1.3e-43 179.9 128 85.2
BcaC03g14511 Brassica carinata HOM05D000607 ORTHO05D010164 1.1e-42 176.8 135 82.2
Sp6g14880 Schrenkiella parvula HOM05D000607 ORTHO05D010164 2.1e-41 172.6 135 78.5
Sp6g14900 Schrenkiella parvula HOM05D000607 ORTHO05D010164 2.1e-41 172.6 135 82.2
A02p11650 Brassica napus HOM05D000607 ORTHO05D010164 1.3e-40 169.9 128 73.4
BcaB05g21974 Brassica carinata HOM05D000607 ORTHO05D010164 8.7e-40 167.2 135 69.6
BraA02t06228Z Brassica rapa HOM05D000607 ORTHO05D010164 1.5e-39 166.4 128 71.9
BcaC03g14506 Brassica carinata HOM05D000607 ORTHO05D010164 1.9e-39 166.0 136 80.1
A02p11640 Brassica napus HOM05D000607 ORTHO05D010164 9.7e-39 163.7 129 70.5
Sp6g09500 Schrenkiella parvula HOM05D000607 ORTHO05D010164 3.7e-38 161.8 135 78.5
BolC2t08079H Brassica oleracea HOM05D000607 ORTHO05D010164 6.5e-35 151.0 130 71.5
BcaC03g14510 Brassica carinata HOM05D000607 ORTHO05D010164 2.1e-33 146.0 115 80.9
BraA10t43102Z Brassica rapa HOM05D000607 ORTHO05D010164 4.6e-33 144.8 133 74.4
Sp6g14870 Schrenkiella parvula HOM05D000607 ORTHO05D010164 4.6e-33 144.8 116 79.3
BcaB08g35624 Brassica carinata HOM05D000607 ORTHO05D010164 1.0e-32 143.7 133 72.2
A10p10240 Brassica napus HOM05D000607 ORTHO05D010164 1.0e-32 143.7 133 73.7
BraA10t43103Z Brassica rapa HOM05D000607 ORTHO05D010164 1.0e-32 143.7 133 73.7
BcaC04g20551 Brassica carinata HOM05D000607 ORTHO05D010164 1.3e-32 143.3 140 72.1
A10p10250 Brassica napus HOM05D000607 ORTHO05D010164 1.3e-32 143.3 133 73.7
C09p42230 Brassica napus HOM05D000607 ORTHO05D010164 1.3e-32 143.3 133 73.7
BolC9t57104H Brassica oleracea HOM05D000607 ORTHO05D010164 1.3e-32 143.3 133 73.7
BcaB01g00906 Brassica carinata HOM05D000607 ORTHO05D010164 1.8e-32 142.9 118 81.4
C02p19460 Brassica napus HOM05D000607 ORTHO05D010164 4.3e-31 138.3 107 71.0
BolC2t08080H Brassica oleracea HOM05D000607 ORTHO05D010164 4.3e-31 138.3 107 71.0
BcaC04g20552 Brassica carinata HOM05D000607 ORTHO05D010164 7.4e-31 137.5 133 72.2
C09p42220 Brassica napus HOM05D000607 ORTHO05D010164 7.4e-31 137.5 133 72.2
BolC9t57103H Brassica oleracea HOM05D000607 ORTHO05D010164 7.4e-31 137.5 133 72.2
BcaB01g04211 Brassica carinata HOM05D000607 ORTHO05D010164 9.7e-31 137.1 137 59.9
Thhalv10014994m.g Eutrema salsugineum HOM05D000607 ORTHO05D010164 6.3e-30 134.4 135 73.3
CARHR265680 Cardamine hirsuta HOM05D000607 ORTHO05D010164 3.4e-28 128.6 128 59.4
A03p15560 Brassica napus HOM05D000607 ORTHO05D010164 6.5e-27 124.4 128 57.0
BraA03t10848Z Brassica rapa HOM05D000607 ORTHO05D010164 6.5e-27 124.4 128 57.0
C03p18170 Brassica napus HOM05D000607 ORTHO05D010164 1.4e-26 123.2 129 55.8
BolC3t14218H Brassica oleracea HOM05D000607 ORTHO05D010164 1.4e-26 123.2 129 55.8
CARHR265710 Cardamine hirsuta HOM05D000607 ORTHO05D010164 9.4e-26 120.6 134 67.9
C03p18190 Brassica napus HOM05D000607 ORTHO05D010164 1.2e-25 120.2 128 55.5
BolC3t14220H Brassica oleracea HOM05D000607 ORTHO05D010164 1.2e-25 120.2 128 55.5
AT5G52750 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 4.7e-25 118.2 134 67.2
AL8G27180 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 1.0e-24 117.1 134 61.9
Sp6g14910 Schrenkiella parvula HOM05D000607 ORTHO05D010164 5.1e-24 114.8 134 62.7
CARHR265700 Cardamine hirsuta HOM05D000607 ORTHO05D010164 1.5e-23 113.2 136 63.2
Carub.0008s1291 Capsella rubella HOM05D000607 ORTHO05D010164 4.4e-23 111.7 131 63.4
Carub.0008s1292 Capsella rubella HOM05D000607 ORTHO05D010164 7.4e-23 110.9 131 63.4
Aa31LG3G8990 Aethionema arabicum HOM05D000607 ORTHO05D010164 1.7e-22 109.8 123 52.0
Carub.0008s1290 Capsella rubella HOM05D000607 ORTHO05D010164 2.2e-22 109.4 127 64.6
A02p11630 Brassica napus HOM05D000607 ORTHO05D010164 3.7e-22 108.6 110 58.2
BcaC03g14502 Brassica carinata HOM05D000607 ORTHO05D010164 4.8e-22 108.2 114 57.9
C02p19400 Brassica napus HOM05D000607 ORTHO05D010164 8.2e-22 107.5 110 64.5
AL8G27190 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 3.1e-21 105.5 129 52.7
Aa31LG3G9010 Aethionema arabicum HOM05D000607 ORTHO05D010164 4.1e-21 105.1 139 55.4
BcaB05g21973 Brassica carinata HOM05D000607 ORTHO05D010164 1.5e-20 103.2 91 63.7
BraA02t06224Z Brassica rapa HOM05D000607 ORTHO05D010164 1.0e-19 100.5 64 79.7
BcaB05g21977 Brassica carinata HOM05D000607 ORTHO05D010164 1.3e-19 100.1 110 60.9
Carub.0008s1289 Capsella rubella HOM05D000607 ORTHO05D010164 8.5e-19 97.4 136 55.1
Carub.0008s1293 Capsella rubella HOM05D000607 ORTHO05D010164 8.0e-17 90.9 130 48.5
Aa31LG3G8040 Aethionema arabicum HOM05D000607 ORTHO05D010164 8.8e-16 87.4 134 44.0
AL8G27200 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 2.6e-15 85.9 135 55.6
THA.LOC104825116 Tarenaya hassleriana HOM05D000607 ORTHO05D010164 3.3e-15 85.5 129 39.5
C09p42340 Brassica napus HOM05D000607 ORTHO05D010164 5.7e-15 84.7 83 55.4
BolC9t57113H Brassica oleracea HOM05D000607 ORTHO05D010164 5.7e-15 84.7 83 55.4
Aa31LG3G8050 Aethionema arabicum HOM05D000607 ORTHO05D010164 2.8e-14 82.4 128 43.0
BcaC04g20541 Brassica carinata HOM05D000607 ORTHO05D010164 4.8e-14 81.6 79 55.7
Aa31LG3G8030 Aethionema arabicum HOM05D000607 ORTHO05D010164 1.4e-13 80.1 125 41.6
AT5G52760 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 1.2e-12 77.0 98 50.0
Aa31LG3G9000 Aethionema arabicum HOM05D000607 ORTHO05D010164 2.6e-12 75.9 63 58.7
Medtr1g099800 Medicago truncatula HOM05D000607 ORTHO05D000518 1.3e-11 73.6 132 45.5
Medtr1g099810 Medicago truncatula HOM05D000607 ORTHO05D000518 2.9e-11 72.4 136 49.3
Glyma.10G230600 Glycine max HOM05D000607 ORTHO05D000518 1.9e-10 69.7 135 45.9
BcaC01g06197 Brassica carinata HOM05D000607 ORTHO05D010164 2.5e-10 69.3 93 47.3
BcaC01g06201 Brassica carinata HOM05D000607 ORTHO05D010164 2.5e-10 69.3 93 47.3
TPR.G7773 Trifolium pratense HOM05D000607 ORTHO05D000518 5.5e-10 68.2 132 45.5
Lalb_Chr06g0161361 Lupinus albus HOM05D000607 ORTHO05D000518 9.4e-10 67.4 135 34.8
VMungo0720G2224 Vigna mungo HOM05D000607 ORTHO05D000518 1.2e-09 67.0 140 44.3
CARHR265690 Cardamine hirsuta HOM05D000607 ORTHO05D010164 1.6e-09 66.6 41 82.9
Phvul.007G074900 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.6e-09 66.6 132 40.2
Phvul.007G075000 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.6e-09 66.6 135 45.2
Lj2g0000091 Lotus japonicus HOM05D000607 ORTHO05D000518 3.6e-09 65.5 127 40.2
THA.LOC104811950 Tarenaya hassleriana HOM05D000607 ORTHO05D010164 3.6e-09 65.5 125 42.4
TPR.G7762 Trifolium pratense HOM05D000607 ORTHO05D000518 8.0e-09 64.3 129 36.4
CSS0046435 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.3e-08 62.8 62 45.2
Haze_00053 Corylus avellana HOM05D000607 ORTHO05D000518 2.3e-08 62.8 127 41.7
Atru.chr1.349 Acer truncatum HOM05D000607 ORTHO05D000518 3.0e-08 62.4 138 45.7
arahy.Tifrunner.gnm1.ann1.M1BTB5 Arachis hypogaea HOM05D000607 ORTHO05D000518 3.0e-08 62.4 130 42.3
AT5G52770 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 5.2e-08 61.6 49 55.1
VMungo0464G1937 Vigna mungo HOM05D000607 ORTHO05D000518 8.8e-08 60.8 62 43.5
Atru.ctg97_1.34 Acer truncatum HOM05D000607 ORTHO05D000518 1.2e-07 60.5 135 45.9
PSO478G2661 Papaver somniferum HOM05D000607 ORTHO05D000518 1.2e-07 60.5 125 30.4
PSO478G4469 Papaver somniferum HOM05D000607 ORTHO05D000518 1.2e-07 60.5 125 30.4
Medtr1g099815 Medicago truncatula HOM05D000607 ORTHO05D000518 1.5e-07 60.1 131 44.3
Medtr6g051690 Medicago truncatula HOM05D000607 ORTHO05D000518 1.5e-07 60.1 127 37.8
PSO782G0004 Papaver somniferum HOM05D000607 ORTHO05D000518 1.5e-07 60.1 125 29.6
PSO782G1566 Papaver somniferum HOM05D000607 ORTHO05D000518 1.5e-07 60.1 125 29.6
PSO782G4468 Papaver somniferum HOM05D000607 ORTHO05D000518 1.5e-07 60.1 125 29.6
PSO782G4991 Papaver somniferum HOM05D000607 ORTHO05D000518 1.5e-07 60.1 125 29.6
PSO782G5097 Papaver somniferum HOM05D000607 ORTHO05D000518 1.5e-07 60.1 125 29.6
CANSAT21G0231 Cannabis sativa HOM05D000607 ORTHO05D000518 2.0e-07 59.7 62 43.5
CANSAT26G0001 Cannabis sativa HOM05D000607 ORTHO05D000518 2.0e-07 59.7 62 43.5
Medtr1g102240 Medicago truncatula HOM05D000607 ORTHO05D000518 2.0e-07 59.7 131 44.3
Lj5A278G73 Lonicera japonica HOM05D000101 ORTHO05D002559 2.6e-07 59.3 67 43.3
Atru.ctg97_1.33 Acer truncatum HOM05D000607 ORTHO05D000518 3.3e-07 58.9 138 45.7
BcaB07g31534 Brassica carinata HOM05D000607 ORTHO05D014031 3.3e-07 58.9 62 48.4
Medtr1g099640 Medicago truncatula HOM05D000607 ORTHO05D000518 3.3e-07 58.9 62 41.9
Psat6g195960 Pisum sativum HOM05D000607 ORTHO05D000518 3.3e-07 58.9 129 36.4
Migut.E01209 Erythranthe guttata HOM05D000607 ORTHO05D000518 4.4e-07 58.5 125 32.0
Lalb_Chr19g0130601 Lupinus albus HOM05D000607 ORTHO05D000518 4.4e-07 58.5 134 38.8
Sed0023456 Sechium edule HOM05D000607 ORTHO05D000518 4.4e-07 58.5 131 42.7
TPR.G33527 Trifolium pratense HOM05D000607 ORTHO05D000518 4.4e-07 58.5 130 39.2
arahy.Tifrunner.gnm1.ann1.Y27KNC Arachis hypogaea HOM05D000607 ORTHO05D000518 7.5e-07 57.8 130 42.3
BraA10t43104Z Brassica rapa HOM05D000607 ORTHO05D010164 7.5e-07 57.8 36 75.0
CANSAT21G0742 Cannabis sativa HOM05D000607 ORTHO05D000518 7.5e-07 57.8 125 36.8
Dinv35259 Davidia involucrata HOM05D000607 ORTHO05D000518 7.5e-07 57.8 131 41.2
Migut.E01208 Erythranthe guttata HOM05D000607 ORTHO05D000518 7.5e-07 57.8 125 31.2
Phvul.004G106900 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 7.5e-07 57.8 127 29.9
Potri.004G073100 Populus trichocarpa HOM05D000607 ORTHO05D000518 7.5e-07 57.8 125 37.6
Atru.chr1.346_Atru.chr1.347_Atru.chr1.348 Acer truncatum HOM05D000607 ORTHO05D000518 9.7e-07 57.4 134 38.8
Actinidia08584 Actinidia chinensis HOM05D000607 ORTHO05D000518 9.7e-07 57.4 130 38.5
CANSAT21G1038 Cannabis sativa HOM05D000607 ORTHO05D000518 9.7e-07 57.4 128 41.4
Eucgr.E00765 Eucalyptus grandis HOM05D000607 ORTHO05D000518 9.7e-07 57.4 68 41.2
FAN10G0237 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.7e-07 57.4 125 39.2
FAN10G3187 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.7e-07 57.4 125 39.2
Phvul.007G075100 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 9.7e-07 57.4 132 38.6
Potri.017G147000 Populus trichocarpa HOM05D000607 ORTHO05D000518 9.7e-07 57.4 129 41.1
AUR62021116 Chenopodium quinoa HOM05D000607 ORTHO05D000518 1.3e-06 57.0 131 31.3
Ciclev10006198m.g Citrus clementina HOM05D000607 ORTHO05D000518 1.3e-06 57.0 131 41.2
HanXRQChr15g0493181 Helianthus annuus HOM05D000607 ORTHO05D000518 1.3e-06 57.0 62 40.3
Lsat_1_v5_gn_9_56680 Lactuca sativa HOM05D000607 ORTHO05D000518 1.3e-06 57.0 62 48.4
Manes.06G153100 Manihot esculenta HOM05D000607 ORTHO05D000518 1.3e-06 57.0 62 45.2
PSO782G1183 Papaver somniferum HOM05D000607 ORTHO05D000518 1.3e-06 57.0 125 28.0
VMungo0464G1709 Vigna mungo HOM05D000607 ORTHO05D000518 1.3e-06 57.0 129 30.2
MSTRG.27080 Avicennia marina HOM05D000607 ORTHO05D000518 1.7e-06 56.6 135 30.4
Glyma.09G130500 Glycine max HOM05D000607 ORTHO05D000518 1.7e-06 56.6 128 34.4
PSO478G0534 Papaver somniferum HOM05D000607 ORTHO05D000518 1.7e-06 56.6 125 29.6
PSO478G1537 Papaver somniferum HOM05D000607 ORTHO05D000518 1.7e-06 56.6 125 29.6
Phvul.007G074600 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.7e-06 56.6 132 37.9
RcHm_v2.0_Chr1g0378461 Rosa chinensis HOM05D000607 ORTHO05D000518 1.7e-06 56.6 135 40.0
CANSAT26G0002 Cannabis sativa HOM05D000607 ORTHO05D000518 2.2e-06 56.2 128 40.6
HanXRQChr12g0381131 Helianthus annuus HOM05D000607 ORTHO05D000518 2.2e-06 56.2 62 45.2
Hma1.2p1_0327F.1_g126470 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 2.2e-06 56.2 62 43.5
Potri.017G147200 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.2e-06 56.2 129 40.3
Potri.017G147300 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.2e-06 56.2 63 42.9
Prupe.2G301600 Prunus persica HOM05D000607 ORTHO05D000518 2.2e-06 56.2 62 40.3
PGR042G3063 Punica granatum HOM05D000607 ORTHO05D000518 2.2e-06 56.2 125 36.8
TWI39G0972 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 2.2e-06 56.2 130 38.5
Actinidia34160 Actinidia chinensis HOM05D000607 ORTHO05D000518 2.8e-06 55.8 137 35.8
AUR62031426 Chenopodium quinoa HOM05D000607 ORTHO05D000518 2.8e-06 55.8 132 32.6
ClCG01G000900 Citrullus lanatus HOM05D000607 ORTHO05D000518 2.8e-06 55.8 62 45.2
COL.COLO4_30303 Corchorus olitorius HOM05D000607 ORTHO05D000518 2.8e-06 55.8 140 35.7
MELO3C005841.2 Cucumis melo HOM05D000607 ORTHO05D000518 2.8e-06 55.8 62 45.2
FAN03G2793 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.8e-06 55.8 133 42.9
HanXRQChr15g0494131 Helianthus annuus HOM05D000607 ORTHO05D000518 2.8e-06 55.8 62 43.5
Lalb_Chr02g0141261 Lupinus albus HOM05D000607 ORTHO05D000518 2.8e-06 55.8 133 39.8
Potri.017G147500 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.8e-06 55.8 62 41.9
FAN03G2538 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.7e-06 55.5 133 42.1
Lalb_Chr03g0034901 Lupinus albus HOM05D000607 ORTHO05D000518 3.7e-06 55.5 126 28.6
PSO478G2148 Papaver somniferum HOM05D000607 ORTHO05D000518 3.7e-06 55.5 125 28.0
PSO782G2562 Papaver somniferum HOM05D000607 ORTHO05D000518 3.7e-06 55.5 62 38.7
PGSC0003DMG400009507 Solanum tuberosum HOM05D000607 ORTHO05D000518 3.7e-06 55.5 153 39.9
PGSC0003DMG400031424 Solanum tuberosum HOM05D000607 ORTHO05D000518 3.7e-06 55.5 153 39.9
VMungo0602G0001 Vigna mungo HOM05D000607 ORTHO05D000518 3.7e-06 55.5 121 45.5
CsaV3_5G001030 Cucumis sativus L. HOM05D000607 ORTHO05D000518 4.8e-06 55.1 62 45.2
Eucgr.A02728 Eucalyptus grandis HOM05D000607 ORTHO05D000518 4.8e-06 55.1 62 46.8
Lalb_Chr03g0034921 Lupinus albus HOM05D000607 ORTHO05D000518 4.8e-06 55.1 62 38.7
Medtr6g049320 Medicago truncatula HOM05D000607 ORTHO05D000518 4.8e-06 55.1 130 30.8
Medtr6g051680 Medicago truncatula HOM05D000607 ORTHO05D000518 4.8e-06 55.1 62 37.1
Potri.004G073000 Populus trichocarpa HOM05D000607 ORTHO05D000518 4.8e-06 55.1 130 36.2
ECA232G1498 Erigeron canadensis HOM05D000607 ORTHO05D000518 6.3e-06 54.7 62 43.5
PSO478G1901 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-06 54.7 62 38.7
PSO478G3873 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-06 54.7 63 38.1
Sed0005218 Sechium edule HOM05D000607 ORTHO05D000518 6.3e-06 54.7 126 40.5
TPR.G33513 Trifolium pratense HOM05D000607 ORTHO05D000518 6.3e-06 54.7 62 40.3
Aa31LG3G8020 Aethionema arabicum HOM05D000607 ORTHO05D010164 8.2e-06 54.3 102 37.3
arahy.Tifrunner.gnm1.ann1.JE8UNX Arachis hypogaea HOM05D000607 ORTHO05D000518 8.2e-06 54.3 62 41.9
Glyma.10G230500 Glycine max HOM05D000607 ORTHO05D000518 8.2e-06 54.3 130 29.2
MD01G1209000 Malus domestica HOM05D000607 ORTHO05D000518 8.2e-06 54.3 62 41.9
PSO478G5073 Papaver somniferum HOM05D000607 ORTHO05D000518 8.2e-06 54.3 125 30.4
Potri.003G132200 Populus trichocarpa HOM05D000607 ORTHO05D000518 8.2e-06 54.3 62 41.9
PGR042G1666 Punica granatum HOM05D000607 ORTHO05D000518 8.2e-06 54.3 132 30.3
HPP92_022269 Vanilla planifolia HOM05D000607 ORTHO05D000518 8.2e-06 54.3 62 43.5


User provided reference genes

Program Settings