Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1765.4 941 100.0
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1662.5 946 94.7
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1659.4 946 94.3
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1637.5 947 93.7
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1629.0 947 93.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1506.1 951 85.6
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1471.4 949 84.3
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1471.4 949 84.3
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1445.6 952 79.9
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1369.0 957 76.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1354.0 949 76.1
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1341.6 956 75.8
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1305.8 958 73.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1164.4 953 66.8
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 4.5e-271 938.3 975 55.7
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 3.9e-259 898.7 564 81.9
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.0e-247 859.8 944 56.0
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 3.7e-177 626.3 1035 40.6
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 4.1e-176 622.9 1026 41.8
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.3e-174 617.1 1009 41.8
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 8.6e-174 615.1 1028 41.8
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.1e-172 610.5 1003 41.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.6e-170 603.6 1008 40.9
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 2.9e-169 600.1 1069 38.8
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 5.4e-168 595.9 982 41.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 9.3e-168 595.1 1025 40.5
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.7e-167 593.6 1008 40.8
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 7.8e-167 592.0 1025 40.4
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 2.3e-166 590.5 1016 40.5
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 6.6e-166 589.0 1003 40.5
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.1e-165 588.2 1028 40.1
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.1e-163 581.6 1005 40.0
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 9.0e-163 578.6 1022 39.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.7e-161 574.3 1019 38.8
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 2.2e-153 547.4 997 38.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 8.4e-153 545.4 1032 38.6
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 4.2e-152 543.1 1027 38.3
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.9e-145 520.4 1031 37.1
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 4.9e-145 519.6 1024 37.3
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.2e-144 516.5 1028 37.0
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.7e-143 513.8 1014 37.7
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 6.0e-143 512.7 1022 38.3
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.9e-143 512.3 1028 36.9
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.1e-139 501.9 985 37.9
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 9.0e-139 498.8 1041 37.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.0e-138 497.7 1019 36.8
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 6.5e-137 492.7 1068 35.3
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.1e-136 491.9 1068 35.2
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.2e-136 490.0 1017 36.6
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.6e-135 488.0 995 37.3
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 7.9e-135 485.7 895 38.1
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.9e-134 483.4 1020 36.4
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.9e-133 481.1 314 84.1
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.9e-133 481.1 1013 36.8
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 8.2e-132 475.7 1025 36.8
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.2e-130 471.9 1012 36.2
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.0e-130 471.1 977 36.6
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 3.4e-130 470.3 1011 36.3
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.5e-128 464.2 863 38.8
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.1e-127 461.1 994 35.8
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.0e-126 458.8 970 36.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-125 454.9 819 37.9
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 2.0e-125 454.5 1006 36.3
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.5e-122 444.9 891 36.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.4e-122 443.7 1025 34.0
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.0e-121 442.2 1018 35.0
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.9e-121 440.7 1018 35.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.4e-120 438.3 1017 34.6
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.5e-120 437.6 1027 35.9
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.1e-119 434.5 750 39.7
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 3.6e-119 433.7 990 35.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 4.4e-117 426.8 1025 34.0
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.8e-115 421.4 1021 33.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 3.1e-115 420.6 1025 34.3
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 4.1e-115 420.2 982 33.5
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.1e-115 420.2 795 37.0
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 9.1e-115 419.1 993 34.5
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 7.7e-114 416.0 993 34.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.3e-113 415.2 1031 34.0
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.9e-113 414.1 1002 34.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.8e-113 413.7 1014 34.6
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 3.8e-113 413.7 994 34.1
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.5e-112 411.8 1010 33.5
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 7.2e-112 409.5 987 35.5
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 4.7e-111 406.8 1004 33.7
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.8e-110 404.8 1011 33.8
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 4.4e-109 400.2 1016 33.0
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.7e-108 398.3 995 33.8
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 3.7e-108 397.1 985 33.6
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.4e-107 395.2 989 33.6
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.7e-105 388.3 869 35.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 2.9e-105 387.5 982 33.7
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 8.0e-103 379.4 981 33.5
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 6.8e-102 376.3 890 33.5
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 3.8e-97 360.5 931 32.3
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 9.1e-91 339.3 949 32.2
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 1.0e-86 325.9 1058 30.3
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 5.7e-85 320.1 992 30.2
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 7.0e-83 313.2 630 35.7
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.0e-81 307.8 479 41.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.5e-80 305.4 846 30.4
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 1.5e-80 305.4 998 30.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.3e-76 292.4 1002 29.8
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 5.4e-75 287.0 660 34.2
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.8e-74 283.1 919 30.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.8e-70 271.9 990 28.1
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 3.0e-57 228.0 336 41.4
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 6.6e-57 226.9 1090 26.1
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 5.6e-56 223.8 926 27.0
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.4e-54 219.2 165 83.0
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.5e-53 215.7 603 32.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.0e-53 215.3 488 35.9
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.5e-48 199.1 486 33.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.3e-48 198.0 466 35.0
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.1e-47 195.3 439 35.8
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.6e-39 167.9 381 36.2
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.7e-36 159.1 320 35.3
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.9e-32 145.6 257 40.5
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.3e-25 122.9 784 24.2
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.1e-24 119.8 365 32.3
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.6e-23 115.9 254 36.2
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 6.9e-22 110.5 293 34.5
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 3.0e-09 68.6 88 53.4
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 5.7e-08 64.3 154 30.5
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 7.4e-08 63.9 254 25.2
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 4.8e-07 61.2 124 33.9
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.4e-06 59.7 169 33.7
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.4e-06 59.7 181 32.6
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 4.1e-06 58.2 88 45.5


User provided reference genes

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