Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14469 Brassica carinata HOM05D004128 ORTHO05D008395 2.6e-135 486.1 406 100.0
BcaC03g15146 Brassica carinata HOM05D004128 ORTHO05D008395 3.3e-98 362.8 403 59.1
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 9.1e-96 354.8 408 57.4
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 2.2e-86 323.6 403 52.1
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 3.3e-82 309.7 395 58.0
A08p09180 Brassica napus HOM05D004128 ORTHO05D008395 9.7e-82 308.1 395 57.2
BcaC06g35975 Brassica carinata HOM05D004128 ORTHO05D008395 4.0e-75 286.2 395 59.0
BcaC04g20967 Brassica carinata HOM05D004128 ORTHO05D008395 1.7e-73 280.8 278 69.4
C09p37460 Brassica napus HOM05D004128 ORTHO05D008395 1.7e-73 280.8 278 69.4
BraA09t38520Z Brassica rapa HOM05D004128 ORTHO05D008395 1.2e-66 258.1 251 66.1
BcaC07g37515 Brassica carinata HOM05D004128 ORTHO05D008395 1.0e-59 235.0 232 65.5
BcaC06g33999 Brassica carinata HOM05D004128 ORTHO05D008395 1.2e-58 231.5 236 72.9
A03p58160 Brassica napus HOM05D004128 ORTHO05D008395 1.2e-50 204.9 253 50.2
BraA08t33244Z Brassica rapa HOM05D004128 ORTHO05D008395 4.0e-35 153.3 100 89.0
C03p57000 Brassica napus HOM05D007203 ORTHO05D031716 5.1e-30 136.3 102 82.4
BcaC01g03026 Brassica carinata HOM05D007203 ORTHO05D031716 1.1e-29 135.2 238 53.4
BolC6t37871H Brassica oleracea HOM05D004128 ORTHO05D008395 2.5e-29 134.0 93 88.2
BcaC01g00586 Brassica carinata HOM05D007203 ORTHO05D031716 1.3e-28 131.7 241 50.2
BcaC02g10649 Brassica carinata HOM05D004128 ORTHO05D017536 3.8e-25 120.2 243 40.3
C04p26220 Brassica napus HOM05D004128 ORTHO05D040950 4.6e-23 113.2 147 51.7
BolC4t24184H Brassica oleracea HOM05D004128 ORTHO05D040950 4.6e-23 113.2 147 51.7
BcaC07g37436 Brassica carinata HOM05D004128 ORTHO05D008395 1.0e-22 112.1 67 91.0
BolC7t43900H Brassica oleracea HOM05D004128 ORTHO05D008395 1.7e-22 111.3 67 85.1
A01p28280 Brassica napus HOM05D004128 ORTHO05D017536 6.2e-20 102.8 74 86.5
BcaC08g45091 Brassica carinata HOM05D004128 ORTHO05D008395 8.1e-20 102.4 88 76.1
BraA07t29497Z Brassica rapa HOM05D004128 ORTHO05D017536 1.8e-19 101.3 74 86.5
BcaB05g23656 Brassica carinata HOM05D004128 ORTHO05D008395 1.5e-18 98.2 425 31.3
BolC2t08771H Brassica oleracea HOM05D004128 ORTHO05D017536 9.9e-18 95.5 55 81.8
C04p26210 Brassica napus HOM05D004128 ORTHO05D017536 1.7e-17 94.7 53 83.0
BolC4t24185H Brassica oleracea HOM05D004128 ORTHO05D017536 1.7e-17 94.7 53 83.0
BcaC08g43405 Brassica carinata HOM05D007203 ORTHO05D094647 6.4e-17 92.8 65 80.0
A07p17750 Brassica napus HOM05D004128 ORTHO05D017536 7.1e-16 89.4 47 87.2
BraA08t33243Z Brassica rapa HOM05D004128 ORTHO05D017536 7.9e-15 85.9 74 77.0
BcaC02g08829 Brassica carinata HOM05D007203 ORTHO05D027555 2.1e-12 77.8 63 69.8
BcaC04g20090 Brassica carinata HOM05D004128 ORTHO05D008395 2.1e-12 77.8 64 67.2
BolC9t57647H Brassica oleracea HOM05D004128 ORTHO05D024421 2.1e-12 77.8 64 67.2
BcaB04g17725 Brassica carinata HOM05D004128 ORTHO05D008395 3.7e-12 77.0 68 63.2
BcaB07g32839 Brassica carinata HOM05D004128 ORTHO05D008395 3.7e-12 77.0 68 63.2
BcaC01g02783 Brassica carinata HOM05D004128 ORTHO05D008395 1.1e-11 75.5 61 65.6
BolC6t36978H Brassica oleracea HOM05D004128 ORTHO05D008395 2.4e-11 74.3 65 64.6
BcaC02g12420 Brassica carinata HOM05D007203 ORTHO05D027555 4.5e-10 70.1 213 32.4
BcaC09g51181 Brassica carinata HOM05D004128 ORTHO05D024421 4.5e-10 70.1 81 55.6
C01p16000 Brassica napus HOM05D007203 ORTHO05D097579 4.5e-10 70.1 81 55.6
A06p29400 Brassica napus HOM05D004128 ORTHO05D008395 7.6e-10 69.3 39 94.9
C01p48550 Brassica napus HOM05D004128 ORTHO05D008395 7.6e-10 69.3 39 94.9
C08p21910 Brassica napus HOM05D004128 ORTHO05D008395 7.6e-10 69.3 39 94.9
BolC9t58725H Brassica oleracea HOM05D004128 ORTHO05D008395 7.6e-10 69.3 39 94.9
C03p60470 Brassica napus HOM05D004128 ORTHO05D008395 2.2e-09 67.8 39 92.3
BcaB01g01921 Brassica carinata HOM05D007203 ORTHO05D011558 2.9e-09 67.4 261 45.2
C03p35510 Brassica napus HOM05D004128 ORTHO05D008395 2.9e-09 67.4 39 92.3
BcaB04g18992 Brassica carinata HOM05D004128 ORTHO05D095711 1.4e-08 65.1 70 58.6
BcaB05g22460 Brassica carinata HOM05D008735 ORTHO05D094962 1.4e-08 65.1 70 58.6
BcaC02g09038 Brassica carinata HOM05D004128 ORTHO05D008395 1.9e-08 64.7 50 70.0
BcaC04g20235 Brassica carinata HOM05D004128 ORTHO05D018561 1.9e-08 64.7 58 67.2
C06p11120 Brassica napus HOM05D007203 ORTHO05D027555 2.5e-08 64.3 54 64.8
C03p46960 Brassica napus HOM05D008735 ORTHO05D099308 5.5e-08 63.2 63 57.1
C04p49980 Brassica napus HOM05D007203 ORTHO05D027555 9.3e-08 62.4 54 64.8
C05p41890 Brassica napus HOM05D004128 ORTHO05D024421 9.3e-08 62.4 258 40.3
BolC2t09432H Brassica oleracea HOM05D004128 ORTHO05D008395 9.3e-08 62.4 36 94.4
BcaB04g17661 Brassica carinata HOM05D004128 ORTHO05D008395 1.2e-07 62.0 67 55.2
C06p37060 Brassica napus HOM05D004128 ORTHO05D008395 2.7e-07 60.8 63 63.5
BcaC01g04075 Brassica carinata HOM05D004128 ORTHO05D018561 4.6e-07 60.1 59 66.1
BcaC09g50406 Brassica carinata HOM05D004128 ORTHO05D008395 6.0e-07 59.7 83 57.8
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 6.0e-07 59.7 83 57.8
BraA09t37753Z Brassica rapa HOM05D007203 ORTHO05D013810 1.0e-06 58.9 70 52.9
BcaC06g35461 Brassica carinata HOM05D004128 ORTHO05D018561 1.3e-06 58.5 85 50.6
BcaC07g40907 Brassica carinata HOM05D004128 ORTHO05D008395 1.3e-06 58.5 58 65.5
A09p66370 Brassica napus HOM05D000181 ORTHO05D003134 1.3e-06 58.5 89 52.8
C03p49800 Brassica napus HOM05D004128 ORTHO05D018561 1.3e-06 58.5 83 57.8
BolC5t32922H Brassica oleracea HOM05D004128 ORTHO05D033837 1.8e-06 58.2 254 39.8
A05p20890 Brassica napus HOM05D004128 ORTHO05D008395 2.3e-06 57.8 88 53.4
C06p23810 Brassica napus HOM05D004128 ORTHO05D013239 2.3e-06 57.8 77 54.5
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 2.3e-06 57.8 88 53.4
BraA09t38472Z Brassica rapa HOM05D004128 ORTHO05D008395 2.3e-06 57.8 91 57.1
A01p27690 Brassica napus HOM05D007203 ORTHO05D013810 3.0e-06 57.4 70 51.4
A02p26840 Brassica napus HOM05D007203 ORTHO05D013810 3.0e-06 57.4 70 51.4
A09p21540 Brassica napus HOM05D007203 ORTHO05D013810 3.0e-06 57.4 70 51.4
BolC8t47741H Brassica oleracea HOM05D039310 ORTHO05D032948 3.0e-06 57.4 68 45.6
BraA01t02907Z Brassica rapa HOM05D007203 ORTHO05D013810 3.0e-06 57.4 70 51.4
BraA02t07693Z Brassica rapa HOM05D007203 ORTHO05D013810 3.0e-06 57.4 70 51.4
C03p80320 Brassica napus HOM05D008735 ORTHO05D097331 3.9e-06 57.0 63 54.0
C08p39080 Brassica napus HOM05D004128 ORTHO05D018561 3.9e-06 57.0 82 57.3
A10p06920 Brassica napus HOM05D004128 ORTHO05D028143 5.1e-06 56.6 87 52.9
C02p46650 Brassica napus HOM05D008735 ORTHO05D098808 5.1e-06 56.6 63 55.6
BcaC07g39620 Brassica carinata HOM05D004128 ORTHO05D008395 6.7e-06 56.2 54 64.8
C02p36290 Brassica napus HOM05D004128 ORTHO05D097649 6.7e-06 56.2 77 55.8
C02p41980 Brassica napus HOM05D004128 ORTHO05D008395 6.7e-06 56.2 77 54.5
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 6.7e-06 56.2 96 51.0
BcaC04g21799 Brassica carinata HOM05D004128 ORTHO05D018561 8.7e-06 55.8 62 61.3
BolC8t49801H Brassica oleracea HOM05D007203 ORTHO05D013810 8.7e-06 55.8 70 51.4


User provided reference genes

Program Settings