Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 3.6e-112 408.3 211 100.0
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 7.5e-110 400.6 212 99.1
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 2.8e-109 398.7 212 98.1
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 2.8e-109 398.7 212 98.1
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.1e-108 396.7 212 98.1
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 8.0e-104 380.6 214 94.9
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.8e-103 379.4 212 95.3
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 2.3e-103 379.0 213 94.8
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 4.9e-101 371.3 220 90.5
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 4.9e-101 371.3 220 90.5
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 9.2e-100 367.1 216 90.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 9.2e-100 367.1 212 93.4
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.2e-99 366.7 216 89.8
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 5.0e-98 361.3 217 89.4
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.2e-96 356.7 223 85.7
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 3.6e-96 355.1 212 87.7
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.2e-96 354.4 213 88.7
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.2e-86 323.6 212 82.1
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.9e-81 306.2 215 80.0
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 3.8e-77 292.0 203 76.4
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 8.7e-66 254.2 211 64.9
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 8.7e-66 254.2 203 67.5
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.1e-65 253.8 197 68.0
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.5e-65 252.7 203 67.5
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 3.3e-65 252.3 207 66.7
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 4.3e-65 251.9 202 66.8
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 7.3e-65 251.1 203 67.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 9.6e-65 250.8 202 68.8
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.6e-64 250.0 207 65.2
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 2.1e-64 249.6 209 66.0
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.1e-64 249.6 202 66.8
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 3.6e-64 248.8 203 68.5
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 6.2e-64 248.1 208 65.9
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 6.2e-64 248.1 202 67.8
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 8.1e-64 247.7 208 64.9
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.1e-63 247.3 202 64.9
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 4.0e-63 245.4 212 64.2
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 5.3e-63 245.0 211 64.5
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.9e-63 244.6 211 63.0
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 6.9e-63 244.6 213 63.8
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 6.9e-63 244.6 204 65.7
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-62 243.8 201 63.7
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.5e-62 243.4 211 63.0
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.5e-62 243.4 203 64.5
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 3.4e-62 242.3 213 64.8
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 3.4e-62 242.3 204 63.7
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 5.8e-62 241.5 203 64.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.6e-62 241.1 211 62.1
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.6e-62 241.1 211 62.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 7.6e-62 241.1 214 62.6
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 1.3e-61 240.4 198 62.1
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 1.3e-61 240.4 203 68.0
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 1.7e-61 240.0 212 62.3
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 1.7e-61 240.0 212 62.3
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.2e-61 239.6 212 62.3
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.2e-61 239.6 212 62.3
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.9e-61 239.2 208 65.4
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.8e-61 238.8 212 61.8
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 3.8e-61 238.8 210 64.3
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 3.8e-61 238.8 215 61.9
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 3.8e-61 238.8 211 63.0
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 6.4e-61 238.0 211 61.1
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 8.4e-61 237.7 212 61.8
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 8.4e-61 237.7 212 61.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 8.4e-61 237.7 209 61.7
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.1e-60 237.3 214 61.2
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 1.4e-60 236.9 205 63.9
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.4e-60 236.9 193 65.8
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 1.9e-60 236.5 199 62.3
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.4e-60 236.1 215 62.8
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 3.2e-60 235.7 200 63.5
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 4.2e-60 235.3 212 62.3
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 7.1e-60 234.6 207 62.8
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 7.1e-60 234.6 202 64.4
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 9.3e-60 234.2 208 63.0
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.2e-59 233.8 202 62.9
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.2e-59 233.8 208 63.5
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.6e-59 233.4 205 63.4
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.1e-59 233.0 207 63.8
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 2.7e-59 232.6 208 63.0
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 4.6e-59 231.9 202 64.4
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.0e-59 231.5 202 61.9
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 6.0e-59 231.5 202 61.4
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 7.9e-59 231.1 205 61.5
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 5.1e-58 228.4 191 61.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 5.1e-58 228.4 191 62.8
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 1.1e-57 227.3 196 63.8
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.9e-57 226.5 203 60.6
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 5.6e-57 224.9 211 59.7
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 8.1e-56 221.1 203 59.6
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 3.1e-55 219.2 240 55.0
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 9.0e-55 217.6 205 61.5
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 3.4e-54 215.7 210 55.7
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.3e-53 213.8 168 64.9
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 2.2e-53 213.0 207 58.9
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 2.9e-53 212.6 211 57.8
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 3.8e-53 212.2 211 56.9
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 3.8e-53 212.2 203 56.7
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.1e-51 206.5 155 66.5
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.1e-51 206.5 155 66.5
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 6.0e-51 204.9 161 69.6
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 2.3e-50 203.0 183 56.8
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 8.2e-48 194.5 161 64.0
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 1.2e-46 190.7 157 61.8
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.2e-43 180.6 140 70.7
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 6.1e-43 178.3 157 58.6
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 7.4e-41 171.4 365 35.3
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.1e-39 167.5 191 51.8
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.1e-39 165.6 128 66.4
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 2.0e-38 163.3 89 88.8
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 7.7e-38 161.4 132 63.6
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.1e-35 153.3 123 69.9
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 1.0e-34 151.0 193 43.0
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 5.1e-34 148.7 193 42.0
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 5.7e-33 145.2 118 67.8
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.3e-32 144.1 116 69.0
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.0e-30 136.7 136 55.1
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 2.6e-30 136.3 109 66.1
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.4e-28 130.6 121 55.4
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 3.2e-28 129.4 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 8.2e-24 114.8 138 50.7
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.4e-23 114.0 194 34.5
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 7.7e-22 108.2 102 61.8
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 6.5e-21 105.1 126 47.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.1e-17 94.4 77 68.8
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.8e-15 87.0 77 63.6
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.6e-14 84.0 76 65.8
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 1.9e-12 77.0 186 30.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 3.2e-12 76.3 59 61.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.2e-12 75.1 47 76.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 8.8e-10 68.2 55 60.0
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 2.8e-08 63.2 60 51.7


User provided reference genes

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