Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 4.9e-32 140.6 74 100.0
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 4.9e-32 140.6 74 100.0
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 4.9e-32 140.6 74 100.0
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 3.2e-31 137.9 74 97.3
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 2.7e-30 134.8 74 95.9
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 6.0e-30 133.7 74 93.2
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.9e-28 128.6 74 89.2
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 7.3e-28 126.7 74 89.2
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 7.3e-28 126.7 74 89.2
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 3.6e-27 124.4 72 88.9
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 6.2e-27 123.6 74 86.5
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 6.2e-27 123.6 74 86.5
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 4.0e-26 120.9 71 88.7
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 9.0e-26 119.8 71 87.3
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 9.0e-26 119.8 71 87.3
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 2.0e-25 118.6 71 85.9
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 2.6e-25 118.2 71 85.9
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 2.2e-24 115.2 71 83.1
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 4.6e-22 107.5 71 76.1
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 5.1e-21 104.0 71 76.1
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 6.6e-21 103.6 66 75.8
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 3.3e-20 101.3 71 74.6
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.1e-18 96.3 71 67.6
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 3.1e-18 94.7 66 68.2
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.1e-18 94.7 66 68.2
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.1e-18 94.7 66 68.2
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 5.3e-18 94.0 66 71.2
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 9.0e-18 93.2 66 69.7
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 1.2e-17 92.8 74 64.9
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 1.2e-17 92.8 73 67.1
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.5e-17 92.4 71 66.2
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 2.0e-17 92.0 66 69.7
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 3.4e-17 91.3 71 64.8
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 4.5e-17 90.9 71 64.8
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.5e-17 90.9 71 66.2
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 7.6e-17 90.1 71 60.6
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 9.9e-17 89.7 71 63.4
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 9.9e-17 89.7 71 63.4
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.3e-16 89.4 71 63.4
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 1.3e-16 89.4 71 63.4
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.3e-16 89.4 63 69.8
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.3e-16 89.4 66 66.7
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 1.3e-16 89.4 66 65.2
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 1.7e-16 89.0 64 68.8
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.7e-16 89.0 75 65.3
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 2.2e-16 88.6 71 64.8
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 2.9e-16 88.2 66 65.2
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 6.4e-16 87.0 62 71.0
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 8.4e-16 86.7 66 63.6
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 1.1e-15 86.3 71 62.0
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 1.4e-15 85.9 71 59.2
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.9e-15 85.5 70 61.4
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 2.4e-15 85.1 74 60.8
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.4e-15 85.1 66 62.1
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 2.4e-15 85.1 71 63.4
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 3.2e-15 84.7 64 67.2
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 4.2e-15 84.3 71 60.6
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 7.1e-15 83.6 63 63.5
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 7.1e-15 83.6 66 60.6
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 9.3e-15 83.2 63 63.5
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.6e-14 82.4 64 65.6
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 2.7e-14 81.6 66 60.6
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 2.7e-14 81.6 66 59.1
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 3.5e-14 81.3 86 52.3
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 3.5e-14 81.3 64 62.5
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 3.5e-14 81.3 71 57.7
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 3.5e-14 81.3 63 60.3
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 4.6e-14 80.9 64 62.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 7.9e-14 80.1 66 59.1
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 7.9e-14 80.1 71 54.9
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.0e-13 79.7 96 51.0
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.0e-13 79.7 69 60.9
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.0e-13 79.7 71 56.3
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 1.0e-13 79.7 71 53.5
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.3e-13 79.3 71 54.9
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 1.8e-13 79.0 71 56.3
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 3.9e-13 77.8 66 57.6
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 3.9e-13 77.8 71 56.3
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 6.7e-13 77.0 64 64.1
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 8.7e-13 76.6 61 62.3
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 8.7e-13 76.6 71 52.1
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 8.7e-13 76.6 92 48.9
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 1.1e-12 76.3 64 60.9
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.1e-12 76.3 71 53.5
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.9e-12 75.5 71 54.9
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 3.3e-12 74.7 71 56.3
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 3.3e-12 74.7 66 53.0
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 4.3e-12 74.3 70 54.3
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 53.5
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 53.5
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 53.5
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 7.4e-12 73.6 71 53.5
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.6e-11 72.4 71 57.7
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 2.1e-11 72.0 64 57.8
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 2.1e-11 72.0 64 56.2
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 2.8e-11 71.6 67 56.7
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 4.8e-11 70.9 66 56.1
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 8.1e-11 70.1 63 60.3
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 1.1e-10 69.7 71 52.1
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 1.4e-10 69.3 67 50.7
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.8e-10 68.9 71 56.3
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 2.4e-10 68.6 51 68.6
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 6.9e-10 67.0 130 36.9
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.5e-09 65.9 74 45.9
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 2.6e-09 65.1 105 40.0
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.6e-09 65.1 45 73.3
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.4e-09 64.7 41 73.2
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.8e-09 63.9 59 57.6
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 5.8e-09 63.9 70 50.0
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 1.0e-08 63.2 56 53.6
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.3e-08 62.8 70 51.4
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 1.3e-08 62.8 57 59.6
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 2.2e-08 62.0 71 45.1
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 2.2e-08 62.0 73 46.6
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 3.8e-08 61.2 41 70.7
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 8.4e-08 60.1 41 68.3
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 8.4e-08 60.1 71 46.5
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 1.4e-07 59.3 41 65.9
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 2.5e-07 58.5 41 70.7
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 2.5e-07 58.5 43 69.8
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 3.2e-07 58.2 45 68.9
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 5.5e-07 57.4 45 66.7
Zm00001eb294050 Zea mays HOM05D006482 ORTHO05D008149 1.2e-06 56.2 74 43.2


User provided reference genes

Program Settings