Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 2.1e-77 292.4 151 100.0
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 3.9e-52 208.4 192 64.1
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 3.9e-52 208.4 192 64.1
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 4.8e-50 201.4 191 62.8
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 4.8e-50 201.4 191 62.8
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 4.8e-50 201.4 191 62.8
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 1.3e-44 183.3 107 90.7
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.8e-44 183.0 195 56.4
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 2.3e-44 182.6 107 90.7
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 5.7e-43 177.9 193 57.0
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 7.4e-43 177.6 195 55.9
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 9.6e-43 177.2 195 56.4
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 4.8e-42 174.9 195 54.4
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.3e-36 156.8 188 50.5
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 6.9e-33 144.4 192 46.9
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 3.6e-29 132.1 191 46.1
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 5.1e-28 128.3 191 45.5
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 6.7e-28 127.9 191 44.0
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 8.8e-28 127.5 191 44.0
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 8.8e-28 127.5 191 44.0
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 4.4e-27 125.2 188 42.0
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 4.4e-27 125.2 189 42.3
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 5.7e-27 124.8 191 41.9
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 7.4e-27 124.4 191 40.8
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 1.7e-26 123.2 191 42.4
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 1.7e-26 123.2 189 42.3
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.7e-26 123.2 189 42.3
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 2.2e-26 122.9 190 40.5
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 2.8e-26 122.5 190 41.1
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 2.8e-26 122.5 190 41.6
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 3.7e-26 122.1 191 41.9
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 1.4e-25 120.2 190 41.6
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 2.4e-25 119.4 190 41.1
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 3.1e-25 119.0 189 41.3
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 4.1e-25 118.6 189 41.3
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 6.9e-25 117.9 189 41.3
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 1.5e-24 116.7 193 38.3
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 5.9e-24 114.8 194 38.7
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 7.7e-24 114.4 191 39.8
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 7.7e-24 114.4 187 41.2
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 1.3e-23 113.6 191 38.7
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 1.7e-23 113.2 188 39.4
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 1.7e-23 113.2 191 40.8
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 2.2e-23 112.8 191 39.3
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 2.2e-23 112.8 191 39.3
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 2.2e-23 112.8 190 38.4
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 2.9e-23 112.5 191 38.7
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 3.8e-23 112.1 191 40.8
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 6.5e-23 111.3 192 38.0
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 6.5e-23 111.3 181 36.5
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 6.5e-23 111.3 188 41.0
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 8.5e-23 110.9 192 38.0
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 1.1e-22 110.5 191 37.2
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.9e-22 109.8 74 78.4
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 2.5e-22 109.4 191 38.2
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 2.5e-22 109.4 192 37.0
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 3.2e-22 109.0 191 37.2
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 3.2e-22 109.0 192 37.0
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 5.5e-22 108.2 188 38.3
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 5.5e-22 108.2 185 38.4
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 5.5e-22 108.2 191 36.1
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 7.2e-22 107.8 191 39.3
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.2e-21 107.1 193 36.3
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 1.6e-21 106.7 188 36.2
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 2.1e-21 106.3 189 40.2
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 2.7e-21 105.9 187 39.0
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 2.7e-21 105.9 191 37.7
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.7e-21 105.1 181 37.0
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 6.1e-21 104.8 204 34.8
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 7.9e-21 104.4 192 36.5
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 7.9e-21 104.4 188 36.2
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.0e-20 104.0 190 37.9
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 1.8e-20 103.2 189 37.0
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 2.3e-20 102.8 190 37.9
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 2.3e-20 102.8 187 38.0
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 2.3e-20 102.8 191 37.7
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 3.9e-20 102.1 193 36.8
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 3.9e-20 102.1 186 38.2
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 5.2e-20 101.7 199 35.2
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 1.1e-19 100.5 187 38.0
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 4.4e-19 98.6 188 36.2
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 5.7e-19 98.2 188 37.2
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 9.7e-19 97.4 193 35.8
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 9.7e-19 97.4 188 35.6
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 1.3e-18 97.1 192 34.4
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 1.7e-18 96.7 185 40.5
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 3.7e-18 95.5 185 40.0
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 6.3e-18 94.7 188 37.2
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 8.2e-18 94.4 192 34.4
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 3.1e-17 92.4 188 34.6
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 3.1e-17 92.4 188 34.6
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 4.1e-17 92.0 185 37.3
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 5.3e-17 91.7 185 39.5
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 1.2e-16 90.5 137 41.6
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 2.0e-16 89.7 185 36.2
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 3.5e-16 89.0 185 34.6
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 3.5e-16 89.0 185 36.8
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 4.5e-16 88.6 185 35.7
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 5.9e-16 88.2 53 81.1
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 2.9e-15 85.9 192 37.5
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 6.5e-15 84.7 190 32.1
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 1.1e-14 84.0 194 34.0
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.5e-14 83.6 191 31.4
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 1.5e-14 83.6 194 34.0
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 1.2e-11 73.9 73 53.4
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 3.3e-11 72.4 168 34.5
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 4.8e-10 68.6 71 49.3
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 3.1e-09 65.9 200 26.5
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 5.9e-08 61.6 60 46.7
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 1.1e-06 57.4 104 36.5
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 5.5e-06 55.1 70 45.7


User provided reference genes

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