Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 4.4e-57 224.9 127 100.0
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 2.2e-56 222.6 127 99.2
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 2.2e-56 222.6 127 99.2
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 8.1e-51 204.1 127 94.5
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 1.4e-50 203.4 129 93.8
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 4.1e-47 191.8 130 85.4
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 4.1e-47 191.8 128 84.4
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 9.2e-47 190.7 130 89.2
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 2.3e-45 186.0 127 74.0
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 2.3e-45 186.0 127 71.7
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 3.9e-45 185.3 127 82.7
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 3.9e-45 185.3 127 82.7
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.5e-44 182.6 127 83.5
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.8e-43 179.1 127 79.5
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.4e-42 176.8 127 68.5
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.4e-42 176.8 127 68.5
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 2.6e-41 172.6 127 67.7
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 7.6e-41 171.0 128 81.2
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-30 136.7 129 69.8
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 2.1e-30 136.3 128 72.7
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 2.1e-30 136.3 128 72.7
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-28 130.6 129 69.0
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 2.1e-27 126.3 126 68.3
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 5.3e-26 121.7 126 55.6
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.5e-25 120.2 129 53.5
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 2.6e-25 119.4 127 59.1
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 2.6e-25 119.4 122 68.9
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 2.6e-25 119.4 127 59.1
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 2.1e-22 109.8 81 64.2
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.1e-22 109.8 81 65.4
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.5e-22 109.0 81 65.4
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.1e-20 104.0 81 61.7
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.6e-20 101.7 123 48.0
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 7.4e-20 101.3 81 60.5
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 7.4e-20 101.3 81 60.5
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 9.6e-20 100.9 81 60.5
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.1e-19 99.8 75 65.3
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 3.6e-19 99.0 122 47.5
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.1e-18 97.4 85 56.5
BcaC01g06349 Brassica carinata HOM05D004357 ORTHO05D005064 5.3e-18 95.1 118 66.1
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 4.5e-17 92.0 73 61.6
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 9.9e-17 90.9 76 59.2
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 2.9e-16 89.4 57 66.7
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 2.9e-16 89.4 77 57.1
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 3.8e-16 89.0 88 58.0
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 4.9e-16 88.6 89 55.1
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 6.4e-16 88.2 76 61.8
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 8.4e-16 87.8 76 56.6
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.4e-15 87.0 75 57.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.4e-15 87.0 75 57.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.4e-15 87.0 75 57.3
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 3.2e-15 85.9 76 59.2
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.2e-15 85.5 76 55.3
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 7.1e-15 84.7 80 55.0
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.6e-14 83.6 73 61.6
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.6e-14 83.6 76 59.2
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 2.7e-14 82.8 88 50.0
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 88 50.0
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 88 50.0
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 88 50.0
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 88 50.0
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.7e-14 82.8 80 56.2
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 2.7e-14 82.8 80 56.2
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.7e-14 82.8 75 60.0
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 3.5e-14 82.4 73 61.6
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 3.5e-14 82.4 75 58.7
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 4.6e-14 82.0 75 54.7
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 6.0e-14 81.6 73 57.5
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 6.0e-14 81.6 73 58.9
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 6.0e-14 81.6 84 51.2
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 7.9e-14 81.3 76 56.6
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 7.9e-14 81.3 71 62.0
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 7.9e-14 81.3 73 61.6
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.0e-13 80.9 82 57.3
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 1.0e-13 80.9 88 48.9
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 1.0e-13 80.9 77 53.2
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 1.3e-13 80.5 75 54.7
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.3e-13 80.5 80 55.0
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 1.3e-13 80.5 78 53.8
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 1.3e-13 80.5 73 60.3
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.3e-13 80.5 75 57.3
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.8e-13 80.1 73 53.4
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.8e-13 80.1 87 51.7
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.8e-13 80.1 87 50.6
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 1.8e-13 80.1 73 60.3
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.8e-13 80.1 75 57.3
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.8e-13 80.1 80 55.0
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.8e-13 80.1 93 49.5
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 60.3
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.0e-13 79.3 76 56.6
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.9e-13 79.0 88 48.9
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 82 56.1
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 3.9e-13 79.0 82 56.1
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 3.9e-13 79.0 73 58.9
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 6.7e-13 78.2 75 53.3
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 6.7e-13 78.2 78 51.3
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 6.7e-13 78.2 74 56.8
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 8.7e-13 77.8 71 59.2
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 8.7e-13 77.8 71 60.6
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.1e-12 77.4 71 59.2
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-12 77.4 74 60.8
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 2.5e-12 76.3 71 57.7
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.5e-12 76.3 83 51.8
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 2.5e-12 76.3 83 51.8
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.3e-12 75.9 76 53.9
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.3e-12 75.5 73 56.2
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 5.6e-12 75.1 73 57.5
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 7.4e-12 74.7 73 54.8
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 9.6e-12 74.3 73 53.4
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.3e-11 73.9 73 54.8
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.3e-11 73.9 75 54.7
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.6e-11 73.6 73 54.8
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.6e-11 73.6 73 54.8
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.8e-11 72.8 73 54.8
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 3.7e-11 72.4 57 61.4
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 3.7e-11 72.4 73 53.4
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 3.7e-11 72.4 73 53.4
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 4.8e-11 72.0 73 53.4
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 4.8e-11 72.0 129 38.0
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 4.8e-11 72.0 73 54.8
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 4.8e-11 72.0 73 50.7
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 4.8e-11 72.0 73 52.1
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 6.2e-11 71.6 76 53.9
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.1e-10 70.9 88 46.6
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.1e-10 70.9 82 47.6
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.4e-10 70.5 73 50.7
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 1.8e-10 70.1 72 51.4
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.4e-10 69.7 73 56.2
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 2.4e-10 69.7 88 45.5
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 4.0e-10 68.9 53 62.3
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 4.0e-10 68.9 100 44.0
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 4.0e-10 68.9 57 56.1
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 6.9e-10 68.2 73 49.3
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 9.0e-10 67.8 58 56.9
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 2.0e-09 66.6 58 56.9
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 2.6e-09 66.2 79 44.3
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 2.6e-09 66.2 56 58.9
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 3.4e-09 65.9 73 47.9
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 4.5e-09 65.5 71 45.1
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 5.8e-09 65.1 75 41.3
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 5.8e-09 65.1 76 51.3
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 7.6e-09 64.7 71 50.7
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.6e-09 64.7 73 45.2
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 7.6e-09 64.7 58 55.2
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 7.6e-09 64.7 84 44.0
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.0e-08 64.3 73 45.2
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 1.0e-08 64.3 58 55.2
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.7e-08 63.5 76 50.0
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 4.9e-08 62.0 70 45.7
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 8.4e-08 61.2 70 44.3
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 1.1e-07 60.8 63 54.0
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 1.4e-07 60.5 62 54.8
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 7.1e-07 58.2 97 37.1
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 9.3e-07 57.8 85 42.4
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 1.2e-06 57.4 73 47.9
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 1.6e-06 57.0 85 42.4
BcaB01g04367 Brassica carinata HOM05D004357 ORTHO05D005064 2.1e-06 56.6 30 76.7
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 6.0e-06 55.1 77 45.5
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 6.0e-06 55.1 76 40.8


User provided reference genes

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