Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 4.1e-37 157.5 78 100.0
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 4.1e-37 157.5 78 100.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 1.7e-35 152.1 78 96.2
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-35 151.8 78 96.2
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 6.5e-35 150.2 77 94.8
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.1e-33 145.2 78 93.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.7e-33 144.1 78 92.3
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 6.1e-33 143.7 78 92.3
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 8.0e-33 143.3 78 91.0
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 2.3e-32 141.7 78 91.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 2.3e-32 141.7 78 91.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.3e-30 136.0 77 85.7
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 8.3e-30 133.3 78 85.9
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 8.3e-30 133.3 78 85.9
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 5.4e-29 130.6 78 84.6
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 4.5e-28 127.5 78 84.6
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 4.5e-28 127.5 78 83.3
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 4.5e-28 127.5 78 83.3
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 9.4e-26 119.8 69 81.2
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 1.2e-25 119.4 67 88.1
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 8.0e-25 116.7 67 77.6
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.0e-24 116.3 64 84.4
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.4e-24 115.9 64 82.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.4e-24 115.9 64 82.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.4e-24 115.9 64 82.8
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 1.8e-24 115.5 69 79.7
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.0e-24 114.4 64 81.2
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 4.0e-24 114.4 64 82.8
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 4.0e-24 114.4 66 83.3
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 5.2e-24 114.0 64 84.4
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 5.2e-24 114.0 77 72.7
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.8e-24 113.6 64 82.8
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 8.8e-24 113.2 61 83.6
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 8.8e-24 113.2 64 82.8
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 8.8e-24 113.2 64 82.8
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 1.2e-23 112.8 64 79.7
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.2e-23 112.8 64 81.2
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.2e-23 112.8 63 79.4
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.2e-23 112.8 64 79.7
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.0e-23 112.1 61 82.0
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.0e-23 112.1 62 82.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.6e-23 111.7 77 67.5
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 2.6e-23 111.7 64 81.2
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 3.4e-23 111.3 64 82.8
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 4.4e-23 110.9 63 79.4
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 7.5e-23 110.2 64 79.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 7.5e-23 110.2 64 78.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 7.5e-23 110.2 64 79.7
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 9.8e-23 109.8 69 79.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.3e-22 109.4 71 71.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 2.2e-22 108.6 64 78.1
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 2.2e-22 108.6 64 78.1
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 2.8e-22 108.2 61 77.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.7e-22 107.8 69 71.0
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 4.9e-22 107.5 64 76.6
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 6.3e-22 107.1 70 74.3
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.3e-22 107.1 74 68.9
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 6.3e-22 107.1 69 78.3
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 8.3e-22 106.7 69 71.0
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 8.3e-22 106.7 64 76.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 8.3e-22 106.7 64 78.1
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.1e-21 106.3 58 86.2
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.1e-21 106.3 64 78.1
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.4e-21 105.9 66 74.2
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.4e-21 105.9 64 76.6
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 69 69.6
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 69 69.6
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.8e-21 105.5 64 76.6
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.8e-21 105.5 64 76.6
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 1.8e-21 105.5 64 76.6
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 3.1e-21 104.8 64 71.9
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.1e-21 104.8 66 72.7
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 3.1e-21 104.8 63 76.2
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 3.1e-21 104.8 68 70.6
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 4.1e-21 104.4 64 75.0
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 4.1e-21 104.4 64 75.0
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 4.1e-21 104.4 64 71.9
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 5.4e-21 104.0 75 69.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 5.4e-21 104.0 75 69.3
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 5.4e-21 104.0 63 74.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 9.1e-21 103.2 66 74.2
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.2e-20 102.8 64 73.4
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 1.2e-20 102.8 64 75.0
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.6e-20 102.4 64 73.4
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.6e-20 102.4 64 73.4
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.0e-20 102.1 66 72.7
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.7e-20 101.7 69 68.1
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 2.7e-20 101.7 64 73.4
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 3.5e-20 101.3 62 75.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.5e-20 101.3 69 68.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.5e-20 101.3 69 68.1
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.9e-19 98.2 66 71.2
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 8.6e-19 96.7 66 68.2
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.6e-19 96.7 64 68.8
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 8.6e-19 96.7 64 68.8
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.1e-18 96.3 75 62.7
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.5e-18 95.9 64 67.2
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 1.9e-18 95.5 56 80.4
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 3.3e-18 94.7 64 68.8
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 4.2e-18 94.4 61 70.5
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 5.5e-18 94.0 77 55.8
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 7.2e-18 93.6 68 69.1
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 2.1e-17 92.0 54 77.8
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 2.8e-17 91.7 50 82.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 4.0e-16 87.8 64 62.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.0e-15 85.5 60 70.0
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 7.5e-07 57.0 45 60.0
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.7e-06 55.8 58 41.4
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 8.3e-06 53.5 40 57.5


User provided reference genes

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