Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 3.6e-39 164.5 83 100.0
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 5.1e-38 160.6 81 98.8
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 2.0e-37 158.7 81 97.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.0e-37 158.7 81 97.5
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.7e-37 157.1 81 96.3
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 5.7e-37 157.1 81 96.3
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.2e-36 155.2 81 93.8
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.2e-36 155.2 81 95.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 3.7e-36 154.5 81 93.8
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 8.2e-36 153.3 81 92.6
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 8.2e-36 153.3 81 92.6
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.1e-35 152.9 81 92.6
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.8e-35 152.1 81 91.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.1e-35 151.4 81 92.6
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 3.1e-35 151.4 81 92.6
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 2.0e-34 148.7 82 91.5
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 2.0e-34 148.7 82 91.5
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 2.0e-34 148.7 82 91.5
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.0e-34 148.7 82 91.5
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 7.7e-34 146.7 81 90.1
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.0e-33 146.4 82 90.2
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.2e-33 145.2 81 87.7
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.4 82 89.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.5e-33 143.7 81 84.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.7e-28 129.0 81 74.1
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.7e-28 129.0 81 75.3
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.8e-28 128.3 81 77.8
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.8e-28 128.3 81 74.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.8e-28 128.3 81 75.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.7e-28 127.9 81 75.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 4.8e-28 127.5 81 72.8
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 75.3
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 72.8
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 74.1
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 75.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 72.8
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 6.3e-28 127.1 81 74.1
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 74.1
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 74.1
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 74.1
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 74.1
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 70.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 74.1
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 8.2e-28 126.7 81 72.8
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.1e-27 126.3 81 72.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-27 125.9 81 76.5
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.4e-27 125.9 81 74.1
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.4e-27 125.9 81 71.6
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.4e-27 125.9 81 76.5
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-27 125.6 81 71.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-27 125.6 81 74.1
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.8e-27 125.6 81 72.8
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.8e-27 125.6 81 71.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.4e-27 125.2 81 71.6
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.4e-27 125.2 81 72.8
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.1e-27 124.8 81 71.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.1e-27 124.4 81 71.6
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.1e-27 124.4 81 72.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 4.1e-27 124.4 81 72.8
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.1e-27 124.4 81 71.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.1e-27 124.4 81 70.4
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 70.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 70.4
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 70.4
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 70.4
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 71.6
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 71.6
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 71.6
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 71.6
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 5.3e-27 124.0 81 72.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 7.0e-27 123.6 81 70.4
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 7.0e-27 123.6 81 71.6
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 7.0e-27 123.6 81 70.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 9.1e-27 123.2 81 71.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.1e-27 123.2 81 72.8
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 9.1e-27 123.2 81 72.8
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 9.1e-27 123.2 81 71.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.2e-26 122.9 81 72.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.2e-26 122.9 81 69.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.2e-26 122.9 81 69.1
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.2e-26 122.9 81 69.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.6e-26 122.5 81 71.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.6e-26 122.5 81 72.8
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.6e-26 122.5 81 71.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 69.1
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 69.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 70.4
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 70.4
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 70.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 69.1
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 69.1
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.0e-26 122.1 81 69.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 2.6e-26 121.7 81 69.1
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.6e-26 121.7 81 72.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 2.6e-26 121.7 81 69.1
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.5e-26 121.3 81 69.1
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 4.5e-26 120.9 79 72.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 5.9e-26 120.6 81 71.6
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 5.9e-26 120.6 81 69.1
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 5.9e-26 120.6 81 69.1
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.9e-26 120.6 80 72.5
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.7e-26 120.2 81 69.1
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 7.7e-26 120.2 81 69.1
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 69.1
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 69.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 70.4
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 69.1
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 70.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.0e-25 119.8 81 70.4
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.3e-25 119.4 81 67.9
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.3e-25 119.4 79 70.9
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.3e-25 119.4 81 69.1
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.7e-25 119.0 81 67.9
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.7e-25 119.0 81 67.9
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.2e-25 118.6 81 71.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-25 118.6 81 67.9
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-25 118.6 81 67.9
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 2.2e-25 118.6 81 71.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 2.2e-25 118.6 81 69.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 5.0e-25 117.5 81 70.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 5.0e-25 117.5 79 70.9
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 5.0e-25 117.5 81 70.4
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.0e-25 117.5 81 70.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 6.5e-25 117.1 81 70.4
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 8.5e-25 116.7 73 76.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 8.5e-25 116.7 80 70.0
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-24 116.3 79 69.6
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.1e-24 116.3 80 70.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 5.5e-24 114.0 81 67.9
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.5e-24 114.0 76 71.1
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-23 112.8 79 67.1
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-23 112.8 79 67.1
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.4e-22 109.4 81 64.2
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-21 105.5 54 98.1
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 8.2e-20 100.1 81 61.7
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.4e-19 99.4 80 62.5
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 5.3e-19 97.4 66 66.7
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-18 96.3 65 67.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.0e-18 95.5 66 69.7
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 4.5e-18 94.4 75 64.0
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.7e-17 92.4 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 9.4e-16 86.7 70 62.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.7e-15 85.1 65 60.0
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.4e-14 82.8 51 72.5
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.4e-14 82.8 65 63.1
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 5.2e-14 80.9 65 64.6
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.5e-10 68.2 74 50.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.2e-08 60.5 59 54.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 9.4e-08 60.1 64 46.9
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-07 59.3 60 48.3


User provided reference genes

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