Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 7.9e-297 1023.1 539 100.0
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.1e-274 949.5 562 91.8
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 7.4e-263 910.2 551 90.2
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 5.5e-258 894.0 525 92.4
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 1.8e-253 879.0 551 86.2
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 9.1e-253 876.7 525 91.2
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 2.7e-249 865.1 549 86.7
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.5e-247 859.4 551 84.8
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 3.4e-231 805.1 564 79.6
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 2.9e-230 802.0 562 79.5
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 1.8e-229 799.3 564 79.8
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 3.2e-229 798.5 559 80.0
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.5e-218 763.1 555 76.2
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 6.4e-206 721.1 461 86.3
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 4.9e-190 668.3 558 66.3
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.8e-171 606.7 478 64.4
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.3e-171 606.3 580 57.8
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 6.7e-171 604.7 551 59.2
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 3.7e-169 599.0 479 64.7
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 6.3e-169 598.2 478 64.6
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 6.3e-169 598.2 476 64.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 8.2e-169 597.8 497 62.8
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 3.1e-168 595.9 560 58.0
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 4.1e-168 595.5 470 66.4
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.6e-167 592.8 461 65.1
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 7.7e-167 591.3 479 63.3
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.3e-166 590.5 560 59.3
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.3e-166 590.5 560 59.1
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.3e-166 590.5 560 59.1
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 1.1e-165 587.4 462 65.8
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.4e-165 587.0 461 64.2
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.4e-165 587.0 477 64.4
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.4e-165 587.0 471 63.3
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 5.5e-165 585.1 460 65.2
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.7e-164 582.8 553 58.0
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 6.1e-164 581.6 480 63.1
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 6.1e-164 581.6 480 62.9
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 1.0e-163 580.9 474 62.7
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 3.0e-163 579.3 480 62.9
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 6.7e-163 578.2 507 59.8
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 1.1e-162 577.4 478 63.8
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 3.3e-162 575.9 560 55.9
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 5.7e-162 575.1 471 63.9
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 5.7e-162 575.1 477 62.5
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 5.7e-162 575.1 477 62.9
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 5.7e-162 575.1 553 56.1
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 1.7e-161 573.5 473 63.4
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 2.8e-161 572.8 459 64.5
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.8e-161 572.8 474 61.4
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 6.3e-161 571.6 471 62.4
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.1e-160 570.9 460 63.9
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.4e-160 570.5 466 62.4
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 1.4e-160 570.5 460 63.9
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 2.4e-160 569.7 553 56.4
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 3.1e-160 569.3 477 62.1
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 9.1e-160 567.8 460 63.5
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.5e-159 567.0 471 63.1
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.0e-159 566.6 474 60.5
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 3.4e-159 565.8 470 62.1
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 3.4e-159 565.8 478 62.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 4.5e-159 565.5 467 61.9
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.2e-158 563.1 470 63.0
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 5.0e-158 562.0 478 61.3
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.1e-157 560.8 553 57.5
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 1.9e-157 560.1 476 60.7
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.9e-157 560.1 475 62.1
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 3.2e-157 559.3 476 60.9
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 4.2e-157 558.9 464 62.7
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 4.7e-156 555.4 461 63.3
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 6.1e-156 555.1 477 61.6
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.0e-155 554.3 473 60.7
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 8.8e-155 551.2 471 62.2
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 4.4e-154 548.9 476 58.2
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 6.3e-153 545.0 444 62.8
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 5.3e-152 542.0 440 64.8
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 7.0e-152 541.6 524 57.8
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.0e-152 541.6 543 55.8
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 1.2e-151 540.8 478 58.4
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.0e-150 537.7 472 60.4
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.1e-149 534.3 469 59.5
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.1e-149 534.3 476 59.7
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.9e-149 533.5 474 59.7
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 9.4e-149 531.2 536 56.5
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 1.8e-147 526.9 462 58.4
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 3.9e-147 525.8 505 53.9
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 2.0e-146 523.5 462 58.0
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 2.8e-145 519.6 471 56.9
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 3.1e-144 516.2 467 58.2
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 7.7e-143 511.5 459 59.5
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 3.6e-140 502.7 488 53.7
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 4.7e-140 502.3 448 57.4
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 3.5e-135 486.1 487 55.9
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.3e-134 484.2 497 51.5
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.0e-131 474.6 516 50.6
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 3.0e-131 473.0 453 53.0
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 1.4e-120 437.6 494 49.6
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 3.3e-117 426.4 374 59.9
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 5.6e-117 425.6 461 51.4
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 1.0e-110 404.8 404 53.2
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 8.6e-110 401.7 546 41.9
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 4.7e-108 396.0 481 44.1
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 8.0e-108 395.2 479 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 4.6e-103 379.4 484 43.0
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 7.8e-103 378.6 452 43.8
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.4e-96 357.8 385 49.6
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 9.2e-96 355.1 477 42.3
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.0e-94 351.7 384 52.3
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 9.3e-88 328.6 440 39.5
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.6e-79 299.7 308 54.9
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 4.9e-65 253.1 377 49.1
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 9.3e-56 222.2 503 30.2
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 6.9e-51 206.1 424 31.8
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.9e-41 174.1 137 58.4
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 6.5e-41 172.9 148 57.4
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.6e-37 161.0 107 75.7
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 5.7e-37 159.8 191 52.9
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.5e-34 151.8 216 47.7
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 9.4e-32 142.5 135 53.3
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 6.1e-31 139.8 211 37.9
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 2.0e-26 124.8 201 43.3
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 3.5e-26 124.0 120 63.3
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 1.1e-24 119.0 498 23.5
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.6e-23 115.2 68 82.4
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 1.4e-22 112.1 114 57.9
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 1.8e-22 111.7 92 55.4
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 1.7e-20 105.1 81 74.1
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 4.8e-20 103.6 109 50.5
BraA02t07229Z Brassica rapa HOM05D011432 ORTHO05D014939 4.4e-13 80.5 40 100.0
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 5.9e-10 70.1 50 72.0
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 1.3e-09 68.9 67 53.7


User provided reference genes

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