Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1343.6 686 100.0
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1335.5 696 98.6
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1319.3 696 96.8
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-297 1026.2 759 75.2
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 7.0e-250 867.5 735 68.0
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.1e-245 852.0 834 61.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.6e-236 822.4 835 60.4
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.6e-214 750.0 834 56.2
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.7e-199 698.4 825 55.3
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 7.4e-199 698.0 759 57.2
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 6.3e-198 694.9 759 57.6
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.5e-196 688.7 759 56.9
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.7e-195 686.8 824 54.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.7e-191 671.8 831 53.2
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-190 670.2 759 56.3
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 4.8e-190 668.7 764 56.7
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 2.9e-187 659.4 756 56.1
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-158 562.4 780 49.5
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 6.6e-123 445.7 696 47.0
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 8.9e-120 435.3 689 47.3
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 8.1e-113 412.1 680 46.5
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.5e-103 381.3 953 37.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.9e-102 376.3 941 36.2
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.4e-101 374.8 921 38.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.7e-100 370.5 884 38.2
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.1e-98 365.2 960 36.5
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 5.6e-98 362.8 919 36.0
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 9.6e-98 362.1 891 36.4
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 3.7e-97 360.1 899 36.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.2e-95 355.1 933 37.5
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-93 348.6 859 38.8
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.2e-93 346.7 960 36.2
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-91 341.3 842 38.0
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-90 338.2 856 37.7
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.8e-88 331.3 914 35.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-88 331.3 914 35.8
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.4e-87 327.0 838 38.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-85 320.1 936 33.5
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 4.2e-85 320.1 937 33.6
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 6.7e-83 312.8 928 34.6
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 2.8e-81 307.4 885 35.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 8.2e-81 305.8 947 34.0
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-80 305.4 827 36.0
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-79 300.1 933 33.3
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 5.9e-79 299.7 968 33.2
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-76 292.0 923 32.8
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.1e-69 268.9 802 34.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 2.1e-60 238.0 181 72.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.1e-48 197.6 898 27.8
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.0e-46 190.3 674 30.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.6e-44 185.3 432 33.6
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 2.7e-44 184.5 414 34.5
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 8.0e-44 183.0 407 33.9
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.8e-43 181.8 210 54.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.0e-43 180.6 344 37.8
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 6.8e-43 179.9 480 33.1
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 2.0e-42 178.3 513 32.0
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.0e-42 178.3 405 35.3
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 3.4e-42 177.6 427 34.2
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.4e-42 177.2 404 34.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 2.8e-41 174.5 403 33.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.7e-41 174.1 398 34.9
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.7e-41 174.1 375 36.0
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 6.3e-41 173.3 373 35.7
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.8e-40 171.8 399 35.1
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.1e-40 171.0 358 35.5
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.1e-40 170.6 422 35.1
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.4e-40 170.2 399 34.6
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.2e-39 169.1 351 37.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.0e-39 168.3 409 34.2
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.5e-39 167.5 444 32.9
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.3e-38 165.6 406 34.5
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.7e-38 165.2 807 27.8
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.7e-38 165.2 468 31.6
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.3e-38 164.9 431 31.6
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 2.9e-38 164.5 403 33.7
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.8e-38 164.1 434 32.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 5.0e-38 163.7 803 28.0
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 5.0e-38 163.7 848 25.4
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 6.6e-38 163.3 424 33.5
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.3e-37 161.0 368 33.2
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 3.3e-37 161.0 446 33.4
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 9.5e-37 159.5 344 33.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.2e-36 159.1 407 34.6
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.1e-36 158.3 390 33.6
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.8e-36 157.9 366 35.8
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.8e-36 157.9 393 33.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.6e-36 157.5 438 32.0
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.7e-36 157.1 382 33.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.7e-36 157.1 382 33.5
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 6.1e-36 156.8 463 33.5
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 8.0e-36 156.4 422 32.5
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.4e-35 155.6 398 32.4
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.4e-35 155.6 460 32.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.8e-35 155.2 475 30.3
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.8e-35 155.2 317 35.3
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.8e-35 155.2 351 34.8
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 2.3e-35 154.8 582 29.4
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 3.0e-35 154.5 424 32.3
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 4.0e-35 154.1 461 32.3
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 6.8e-35 153.3 689 28.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.2e-34 152.5 917 25.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.5e-34 152.1 391 33.0
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 366 34.2
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 366 34.2
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.6e-34 151.4 366 34.2
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 4.4e-34 150.6 359 34.3
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.3e-33 149.1 709 28.2
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-33 148.3 407 32.2
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.2e-33 148.3 438 31.1
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 2.8e-33 147.9 399 32.6
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.8e-33 147.9 399 32.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.8e-33 147.9 396 32.6
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.7e-33 147.5 456 30.5
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.9e-33 147.1 400 31.8
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 6.3e-33 146.7 859 25.3
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 6.3e-33 146.7 408 31.1
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.4e-32 144.8 406 33.3
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.4e-32 144.8 428 31.5
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.1e-32 144.4 328 34.8
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.1e-32 144.4 398 31.9
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 4.1e-32 144.1 383 31.6
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 5.4e-32 143.7 353 32.9
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.4e-32 143.7 449 31.0
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.0e-32 143.3 392 29.8
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 9.2e-32 142.9 388 32.5
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.2e-31 142.5 521 29.2
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.2e-31 142.5 782 25.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.6e-31 142.1 478 30.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.6e-31 142.1 424 31.6
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.7e-31 141.4 317 35.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.7e-31 141.4 401 31.4
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.5e-31 141.0 493 30.2
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 3.5e-31 141.0 387 31.0
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 4.5e-31 140.6 387 32.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.5e-31 140.6 392 33.4
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.9e-31 140.2 429 30.3
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 7.8e-31 139.8 422 31.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 7.8e-31 139.8 695 28.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.0e-30 139.4 389 31.6
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.0e-30 139.4 417 31.4
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.7e-30 138.7 385 32.2
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.0e-30 137.1 428 29.7
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.1e-29 136.0 422 32.0
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.1e-29 136.0 330 32.1
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.9e-29 135.2 194 43.3
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.6e-29 133.7 472 27.8
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.1e-28 131.7 366 31.4
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 4.7e-28 130.6 789 24.5
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 4.7e-28 130.6 443 28.4
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.1e-28 130.2 385 32.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 6.1e-28 130.2 425 30.8
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 8.0e-28 129.8 388 30.7
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 8.0e-28 129.8 348 33.3
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.4e-27 129.0 379 29.6
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.0e-27 127.5 349 34.1
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.2e-27 127.1 342 34.8
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.4e-24 119.0 383 29.8
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.9e-24 118.6 558 26.3
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.5e-21 109.0 187 39.0
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-15 89.4 269 29.7
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.1e-12 78.6 347 29.4
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.6e-12 77.8 269 27.9
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 8.1e-12 76.6 134 35.1
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.0e-11 74.3 206 31.1
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.2e-10 72.8 286 25.9
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 2.0e-10 72.0 227 30.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.4e-10 71.2 245 29.0
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.7e-09 68.9 177 32.8
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 6.4e-09 67.0 231 26.4
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 1.4e-08 65.9 294 24.8
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 2.4e-08 65.1 213 29.6
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 4.1e-08 64.3 221 29.4
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 5.4e-08 63.9 213 29.1
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 5.4e-08 63.9 284 26.8
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 2.1e-07 62.0 270 24.4
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 2.1e-07 62.0 231 29.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.7e-07 61.6 70 45.7
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 3.5e-07 61.2 194 28.4
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 4.6e-07 60.8 62 58.1
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 1.0e-06 59.7 251 26.7
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.0e-06 59.7 220 23.2
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.3e-06 59.3 272 26.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.7e-06 58.9 220 25.0
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 1.7e-06 58.9 216 27.8
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 2.3e-06 58.5 196 28.6
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 8.6e-06 56.6 225 26.2
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 8.6e-06 56.6 181 27.6


User provided reference genes

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