Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 5.0e-40 167.5 99 100.0
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-39 165.2 99 99.0
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 5.6e-31 137.5 99 78.8
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.7e-30 134.4 109 67.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.8e-29 132.5 65 90.8
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 2.3e-29 132.1 99 86.9
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 2.0e-28 129.0 63 92.1
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 2.0e-28 129.0 63 92.1
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 2.0e-28 129.0 63 92.1
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 9.8e-28 126.7 65 89.2
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-27 126.3 64 89.1
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-27 126.3 64 89.1
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 3.7e-27 124.8 65 89.2
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-24 116.7 99 70.7
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 5.0e-24 114.4 99 67.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.1e-23 113.2 111 59.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.6e-20 102.1 112 52.7
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.8e-20 100.1 104 51.9
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-18 95.9 51 90.2
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.4e-18 95.5 103 51.5
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 7.0e-18 94.0 103 49.5
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.2e-17 93.2 102 50.0
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-17 91.7 106 53.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 3.5e-17 91.7 106 47.2
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 4.6e-17 91.3 64 67.2
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 6.0e-17 90.9 65 63.1
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 6.0e-17 90.9 65 63.1
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 7.8e-17 90.5 106 52.8
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.0e-16 90.1 102 49.0
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-16 90.1 107 52.3
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-16 89.4 64 60.9
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-16 88.6 107 52.3
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 5.0e-16 87.8 64 62.5
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-15 85.9 108 53.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 2.1e-14 82.4 65 50.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.6e-14 81.6 65 56.9
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 4.7e-14 81.3 65 49.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.7e-14 81.3 65 52.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-13 80.1 65 50.8
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.8e-13 79.3 64 54.7
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 8.9e-13 77.0 64 54.7
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.5e-12 76.3 66 50.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 3.4e-12 75.1 65 49.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.7e-11 72.8 61 52.5
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.7e-11 72.8 67 55.2
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.2e-11 72.4 65 41.5
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 2.9e-11 72.0 66 59.1
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 2.9e-11 72.0 65 49.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.7e-11 71.6 65 52.3
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.9e-11 71.2 63 54.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.1e-10 70.1 66 48.5
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 3.2e-10 68.6 65 49.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 5.4e-10 67.8 65 47.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 5.4e-10 67.8 65 47.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.1e-10 67.4 65 46.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.1e-10 67.4 65 46.2
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.2e-09 66.6 65 47.7
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.6e-09 66.2 66 47.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.7e-09 65.5 61 42.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.7e-09 65.5 65 43.1
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.5e-09 65.1 65 44.6
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.5e-09 65.1 61 44.3
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.6e-09 64.7 61 44.3
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 4.6e-09 64.7 67 50.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.6e-09 64.7 66 50.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 6.0e-09 64.3 66 50.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 6.0e-09 64.3 66 50.0
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.8e-09 63.9 65 49.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 7.8e-09 63.9 64 45.3
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.0e-08 63.5 63 46.0
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.7e-08 62.8 61 54.1
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.7e-08 62.8 61 49.2
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.3e-08 62.4 63 44.4
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.3e-08 62.4 66 50.0
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 3.0e-08 62.0 66 43.9
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 3.0e-08 62.0 56 53.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.9e-08 61.6 65 38.5
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 8.6e-08 60.5 65 36.9
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 8.6e-08 60.5 65 36.9
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.1e-07 60.1 61 41.0
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-07 59.7 65 36.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.5e-07 59.7 65 43.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.9e-07 59.3 64 48.4
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.5e-07 58.9 61 42.6
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 3.3e-07 58.5 64 45.3
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 3.3e-07 58.5 66 48.5
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.3e-07 58.2 66 48.5
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 7.3e-07 57.4 65 35.4
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 7.3e-07 57.4 58 39.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 9.5e-07 57.0 54 46.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.5e-07 57.0 63 44.4
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.2e-06 56.6 63 42.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 1.2e-06 56.6 66 42.4
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.6e-06 56.2 66 40.9
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.6e-06 56.2 63 44.4
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.1e-06 55.8 66 40.9
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.1e-06 55.8 66 40.9
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 3.6e-06 55.1 53 47.2
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 4.7e-06 54.7 63 39.7
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.7e-06 54.7 61 37.7
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 6.2e-06 54.3 40 70.0
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 6.2e-06 54.3 65 33.8
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 6.2e-06 54.3 60 43.3


User provided reference genes

Program Settings