Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 1.5e-62 242.7 124 100.0
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 7.2e-52 207.2 158 74.1
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 9.8e-17 90.5 76 64.5
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.2e-16 89.4 76 63.2
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 6.3e-16 87.8 76 61.8
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 8.3e-16 87.4 50 88.0
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.1e-15 87.0 76 61.8
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.4e-15 86.7 75 58.7
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.0e-15 84.3 76 60.5
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 9.1e-15 84.0 76 60.5
BolC2t07549H Brassica oleracea HOM05D004327 ORTHO05D032179 5.9e-14 81.3 91 54.9
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 6.5e-13 77.8 76 56.6
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 8.5e-13 77.4 73 58.9
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.1e-11 72.8 52 69.2
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.7e-11 72.4 95 47.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.7e-11 72.4 52 69.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.1e-11 71.2 76 50.0
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 6.1e-11 71.2 52 67.3
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 6.1e-11 71.2 73 54.8
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 6.1e-11 71.2 78 50.0
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 8.0e-11 70.9 78 50.0
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.0e-10 70.5 51 70.6
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.8e-10 69.7 78 47.4
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.3e-10 69.3 78 50.0
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.0e-10 68.9 49 73.5
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 4.0e-10 68.6 77 49.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.0e-10 68.6 78 50.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.2e-10 68.2 73 53.4
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 6.8e-10 67.8 78 50.0
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.8e-10 67.4 78 50.0
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 8.8e-10 67.4 78 48.7
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 8.8e-10 67.4 78 51.3
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 8.8e-10 67.4 78 48.7
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.2e-09 67.0 75 50.7
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.2e-09 67.0 78 50.0
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.2e-09 67.0 77 48.1
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.2e-09 67.0 76 51.3
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.5e-09 66.6 78 47.4
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.5e-09 66.6 78 47.4
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.5e-09 66.6 79 51.9
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.5e-09 66.6 78 50.0
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 2.0e-09 66.2 47 70.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 2.0e-09 66.2 47 70.2
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.0e-09 66.2 47 70.2
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.6e-09 65.9 78 48.7
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.6e-09 65.9 48 70.8
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.6e-09 65.9 78 50.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.6e-09 65.9 85 48.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.6e-09 65.9 85 48.2
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.6e-09 65.9 75 52.0
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.6e-09 65.9 135 36.3
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 2.6e-09 65.9 78 47.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.6e-09 65.9 77 51.9
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 3.4e-09 65.5 82 45.1
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 3.4e-09 65.5 78 48.7
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 3.4e-09 65.5 52 67.3
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.4e-09 65.5 76 51.3
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.4e-09 65.5 78 50.0
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.4e-09 65.1 92 43.5
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 4.4e-09 65.1 82 45.1
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 4.4e-09 65.1 82 45.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 5.7e-09 64.7 88 43.2
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 5.7e-09 64.7 76 47.4
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.7e-09 64.7 79 50.6
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 5.7e-09 64.7 44 70.5
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 5.7e-09 64.7 78 48.7
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 7.5e-09 64.3 77 45.5
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 7.5e-09 64.3 85 47.1
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 7.5e-09 64.3 78 47.4
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 7.5e-09 64.3 82 43.9
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 9.8e-09 63.9 78 47.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.3e-08 63.5 75 49.3
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 1.3e-08 63.5 47 66.0
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.3e-08 63.5 76 46.1
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.7e-08 63.2 46 67.4
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.7e-08 63.2 94 41.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.7e-08 63.2 175 31.4
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.7e-08 63.2 51 64.7
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.7e-08 63.2 47 66.0
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.7e-08 63.2 76 47.4
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.2e-08 62.8 81 44.4
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.2e-08 62.8 47 66.0
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 2.8e-08 62.4 76 46.1
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.8e-08 62.4 78 47.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.8e-08 62.4 75 48.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 3.7e-08 62.0 95 40.0
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 3.7e-08 62.0 76 46.1
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 6.3e-08 61.2 81 45.7
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.3e-08 61.2 76 44.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 8.3e-08 60.8 78 46.2
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.1e-07 60.5 75 46.7
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.1e-07 60.5 73 45.2
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.1e-07 60.5 73 45.2
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.1e-07 60.5 78 41.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 1.1e-07 60.5 75 48.0
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.1e-07 60.5 74 45.9
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.4e-07 60.1 47 59.6
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.4e-07 60.1 55 54.5
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.4e-07 60.1 78 43.6
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.8e-07 59.7 76 46.1
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.8e-07 59.7 75 46.7
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.4e-07 59.3 76 43.4
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.4e-07 59.3 75 46.7
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.4e-07 59.3 75 48.0
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.4e-07 59.3 58 56.9
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 3.1e-07 58.9 77 45.5
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 4.1e-07 58.5 75 46.7
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 4.1e-07 58.5 75 46.7
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 4.1e-07 58.5 78 43.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 7.0e-07 57.8 53 56.6
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 7.0e-07 57.8 78 43.6
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 9.2e-07 57.4 75 45.3
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.2e-06 57.0 76 44.7
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-06 57.0 98 37.8
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.6e-06 56.6 74 43.2
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.0e-06 56.2 95 36.8
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 2.0e-06 56.2 75 45.3
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 2.0e-06 56.2 75 45.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.0e-06 56.2 77 41.6
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 4.5e-06 55.1 42 64.3
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 4.5e-06 55.1 41 65.9
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.5e-06 55.1 48 60.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 5.9e-06 54.7 76 40.8


User provided reference genes

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