Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14047 Brassica carinata HOM05D007865 ORTHO05D010123 6.1e-158 560.8 295 100.0
BolC2t07384H Brassica oleracea HOM05D007865 ORTHO05D010123 2.4e-154 548.9 295 97.6
BcaC03g14053 Brassica carinata HOM05D007865 ORTHO05D010123 3.4e-153 545.0 295 97.6
A02p07380 Brassica napus HOM05D007865 ORTHO05D010123 2.2e-147 525.8 295 92.9
BraA02t05817Z Brassica rapa HOM05D007865 ORTHO05D010123 2.2e-147 525.8 295 92.9
BcaC03g14051 Brassica carinata HOM05D007865 ORTHO05D010123 6.3e-147 524.2 295 93.6
C02p12860 Brassica napus HOM05D007865 ORTHO05D010123 1.7e-144 516.2 295 92.9
BcaC03g14042 Brassica carinata HOM05D007865 ORTHO05D010123 3.3e-140 501.9 295 90.2
BolC2t07395H Brassica oleracea HOM05D007865 ORTHO05D010123 8.2e-139 497.3 268 97.8
C02p12890 Brassica napus HOM05D007865 ORTHO05D010123 1.2e-137 493.4 299 90.0
C02p12920 Brassica napus HOM05D007865 ORTHO05D010123 4.7e-134 481.5 291 89.3
BcaC03g14044 Brassica carinata HOM05D007865 ORTHO05D010123 4.5e-129 464.9 267 92.1
BolC2t07386H Brassica oleracea HOM05D007865 ORTHO05D010123 4.5e-129 464.9 267 92.1
BolC2t07382H Brassica oleracea HOM05D007865 ORTHO05D010123 7.7e-129 464.2 267 91.8
A02p07230 Brassica napus HOM05D007865 ORTHO05D010123 2.2e-128 462.6 265 92.1
BcaC03g14023 Brassica carinata HOM05D007865 ORTHO05D010123 2.5e-127 459.1 296 84.8
A02p07240 Brassica napus HOM05D007865 ORTHO05D010123 2.5e-127 459.1 265 91.7
A02p07250 Brassica napus HOM05D007865 ORTHO05D010123 2.5e-127 459.1 265 91.3
BraA02t05804Z Brassica rapa HOM05D007865 ORTHO05D010123 3.2e-127 458.8 265 91.3
BraA02t05803Z Brassica rapa HOM05D007865 ORTHO05D010123 1.2e-126 456.8 265 90.9
BraA02t05802Z Brassica rapa HOM05D007865 ORTHO05D010123 3.1e-122 442.2 251 92.8
C02p12610 Brassica napus HOM05D007865 ORTHO05D010123 1.6e-118 429.9 232 92.7
BcaB05g22473 Brassica carinata HOM05D007865 ORTHO05D010123 8.3e-107 391.0 309 71.2
BolC2t07397H Brassica oleracea HOM05D007865 ORTHO05D010123 9.2e-106 387.5 212 92.5
BolC2t07361H Brassica oleracea HOM05D007865 ORTHO05D010123 3.7e-99 365.5 203 94.1
BcaB05g22474 Brassica carinata HOM05D007865 ORTHO05D010123 5.2e-93 345.1 324 64.8
C02p12900 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-85 320.9 177 96.0
BcaC03g14024 Brassica carinata HOM05D007865 ORTHO05D010123 2.1e-70 270.0 148 94.6
BolC2t07362H Brassica oleracea HOM05D007865 ORTHO05D010123 2.1e-70 270.0 148 94.6
C02p12910 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-69 267.7 150 96.0
BcaB05g22471 Brassica carinata HOM05D007865 ORTHO05D010123 4.0e-69 265.8 318 54.1
BcaC03g14025 Brassica carinata HOM05D007865 ORTHO05D010123 2.0e-52 210.3 121 90.1
Thhalv10015599m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 5.0e-43 179.1 241 49.0
C09p51140 Brassica napus HOM05D007865 ORTHO05D010123 5.1e-40 169.1 200 49.5
BolC9t57977H Brassica oleracea HOM05D007865 ORTHO05D010123 5.1e-40 169.1 200 49.5
BcaB08g36307 Brassica carinata HOM05D007865 ORTHO05D010123 3.3e-39 166.4 206 47.6
A10p15310 Brassica napus HOM05D007865 ORTHO05D010123 3.3e-39 166.4 200 49.0
BcaB01g02171 Brassica carinata HOM05D007865 ORTHO05D010123 2.2e-38 163.7 213 47.9
A10p15300 Brassica napus HOM05D007865 ORTHO05D010123 2.8e-38 163.3 200 47.5
BraA10t43702Z Brassica rapa HOM05D007865 ORTHO05D010123 2.8e-38 163.3 200 47.5
AL4G20480 Arabidopsis lyrata HOM05D014137 ORTHO05D010123 4.8e-38 162.5 160 53.8
AL4G20500 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 4.8e-38 162.5 160 53.8
AL8G35160 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 9.1e-37 158.3 171 51.5
Thhalv10015349m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 2.6e-36 156.8 226 44.2
CARHR273100 Cardamine hirsuta HOM05D007865 ORTHO05D010123 3.4e-36 156.4 269 41.3
Thhalv10015750m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.1e-34 151.4 177 52.0
BcaB05g22499 Brassica carinata HOM05D007865 ORTHO05D010123 1.2e-33 147.9 96 80.2
AL8G35690 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 3.9e-32 142.9 142 53.5
BolC9t57975H Brassica oleracea HOM05D007865 ORTHO05D010123 3.3e-31 139.8 200 44.5
C09p51150 Brassica napus HOM05D007865 ORTHO05D010123 5.7e-31 139.0 144 54.2
Carub.0008s1968 Capsella rubella HOM05D007865 ORTHO05D010123 8.2e-30 135.2 158 48.1
Carub.0008s1992 Capsella rubella HOM05D007865 ORTHO05D010123 8.2e-30 135.2 158 48.1
BcaB03g13835 Brassica carinata HOM05D007865 ORTHO05D010123 2.6e-28 130.2 126 58.7
Thhalv10015954m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.7e-27 127.5 158 48.1
BolC2t07399H Brassica oleracea HOM05D007865 ORTHO05D010123 2.9e-27 126.7 69 89.9
BolC2t07398H Brassica oleracea HOM05D007865 ORTHO05D010123 1.1e-26 124.8 97 78.4
Thhalv10028104m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.1e-26 124.8 146 47.3
Thhalv10028345m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 3.2e-26 123.2 144 50.0
BraA10t43701Z Brassica rapa HOM05D007865 ORTHO05D010123 5.5e-26 122.5 198 42.4
AL8G35420 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.1e-25 120.6 161 41.6
Carub.0006s1626 Capsella rubella HOM05D007865 ORTHO05D010123 1.2e-17 94.7 165 38.8
Carub.0001s0263 Capsella rubella HOM05D007865 ORTHO05D010513 2.0e-15 87.4 216 30.6
Thhalv10009374m.g Eutrema salsugineum HOM05D009272 ORTHO05D010513 2.6e-15 87.0 158 37.3
SpUn1022_0010 Schrenkiella parvula HOM05D007865 ORTHO05D010123 1.3e-14 84.7 56 69.6
THA.LOC104813384 Tarenaya hassleriana HOM05D007865 ORTHO05D010123 1.7e-14 84.3 161 31.7
AT3G46565 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 8.3e-14 82.0 86 50.0
CARHR249930 Cardamine hirsuta HOM05D009056 ORTHO05D011508 8.3e-14 82.0 149 36.2
BcaB02g07852 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-13 81.6 238 28.2
C05p01970 Brassica napus HOM05D009272 ORTHO05D015471 1.4e-13 81.3 167 33.5
C05p02270 Brassica napus HOM05D009272 ORTHO05D015471 1.4e-13 81.3 167 33.5
BcaB02g06921 Brassica carinata HOM05D009272 ORTHO05D015471 3.1e-13 80.1 188 31.9
BcaB02g06922 Brassica carinata HOM05D009272 ORTHO05D015471 3.1e-13 80.1 188 31.9
BcaB02g06923 Brassica carinata HOM05D009272 ORTHO05D010123 3.1e-13 80.1 188 31.9
BcaB02g06925 Brassica carinata HOM05D009272 ORTHO05D015471 3.1e-13 80.1 188 31.9
C06p16700 Brassica napus HOM05D009350 ORTHO05D010513 3.1e-13 80.1 166 33.7
BolC6t36869H Brassica oleracea HOM05D009350 ORTHO05D010513 3.1e-13 80.1 166 33.7
AT1G35890 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 4.1e-13 79.7 70 54.3
A05p16820 Brassica napus HOM05D009350 ORTHO05D010513 5.3e-13 79.3 166 33.7
C06p16850 Brassica napus HOM05D009350 ORTHO05D010513 5.3e-13 79.3 166 33.7
BraA05t20583Z Brassica rapa HOM05D009350 ORTHO05D010513 5.3e-13 79.3 166 33.7
BraA05t20585Z Brassica rapa HOM05D009350 ORTHO05D010513 5.3e-13 79.3 166 33.7
BcaC08g44261 Brassica carinata HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BcaC08g44264 Brassica carinata HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BcaC08g44265 Brassica carinata HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BcaC08g44267 Brassica carinata HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
C06p16770 Brassica napus HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
C06p16790 Brassica napus HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
C06p16820 Brassica napus HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BolC5t29005H Brassica oleracea HOM05D009272 ORTHO05D015471 7.0e-13 79.0 167 32.9
BolC6t36876H Brassica oleracea HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BolC6t36877H Brassica oleracea HOM05D009350 ORTHO05D010513 7.0e-13 79.0 166 33.7
BcaC05g24525 Brassica carinata HOM05D009272 ORTHO05D015471 9.1e-13 78.6 167 32.9
BolC5t28976H Brassica oleracea HOM05D009272 ORTHO05D015471 9.1e-13 78.6 167 32.9
BcaB05g22472 Brassica carinata HOM05D007865 ORTHO05D010123 1.6e-12 77.8 47 76.6
AL6G29200 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.0e-12 77.4 166 34.9
A10p02020 Brassica napus HOM05D009272 ORTHO05D015471 2.7e-12 77.0 168 33.9
A10p02460 Brassica napus HOM05D009272 ORTHO05D015471 2.7e-12 77.0 168 33.9
Thhalv10029188m.g Eutrema salsugineum HOM05D009056 ORTHO05D011508 3.5e-12 76.6 130 36.2
BcaC04g24060 Brassica carinata HOM05D009056 ORTHO05D011508 4.5e-12 76.3 142 31.7
C09p01500 Brassica napus HOM05D009056 ORTHO05D011508 4.5e-12 76.3 142 31.7
BraA10t42475Z Brassica rapa HOM05D009272 ORTHO05D015471 4.5e-12 76.3 182 33.5
AL1G12990 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 5.9e-12 75.9 137 35.0
AL1G13550 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 5.9e-12 75.9 137 35.0
THA.LOC104806001 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.9e-12 75.9 144 30.6
THA.LOC104806002 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.9e-12 75.9 144 30.6
CiPaw.01G116900 Carya illinoinensis HOM05D007865 ORTHO05D011589 7.7e-12 75.5 166 32.5
Sp6g01800 Schrenkiella parvula HOM05D009056 ORTHO05D011508 7.7e-12 75.5 153 33.3
THA.LOC104818129 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 7.7e-12 75.5 144 30.6
BraA05t20590Z Brassica rapa HOM05D009350 ORTHO05D010513 1.0e-11 75.1 280 27.9
Thhalv10017056m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 1.0e-11 75.1 143 36.4
CARHR289550 Cardamine hirsuta HOM05D009350 ORTHO05D010513 1.3e-11 74.7 245 29.4
TAR362G0680 Trochodendron aralioides HOM05D000010 ORTHO05D001550 1.3e-11 74.7 190 33.2
Thhalv10017700m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 2.2e-11 73.9 212 32.5
A05p16790 Brassica napus HOM05D009350 ORTHO05D010513 2.9e-11 73.6 281 27.8
BraA05t20584Z Brassica rapa HOM05D009350 ORTHO05D010513 2.9e-11 73.6 283 27.2
C09p01340 Brassica napus HOM05D009056 ORTHO05D011508 3.8e-11 73.2 133 33.8
BraA09t35794Z Brassica rapa HOM05D009056 ORTHO05D011508 3.8e-11 73.2 154 33.8
A09p01400 Brassica napus HOM05D009056 ORTHO05D011508 6.5e-11 72.4 143 32.9
BolC4t21858H Brassica oleracea HOM05D009272 ORTHO05D010513 6.5e-11 72.4 142 34.5
BraA09t35804Z Brassica rapa HOM05D009056 ORTHO05D011508 6.5e-11 72.4 143 32.9
Thhalv10017733m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 6.5e-11 72.4 198 32.3
BcaC02g12724 Brassica carinata HOM05D009272 ORTHO05D010513 1.5e-10 71.2 228 29.8
A05p16800 Brassica napus HOM05D009350 ORTHO05D010513 1.5e-10 71.2 248 27.4
BolC9t53085H Brassica oleracea HOM05D009056 ORTHO05D011508 1.5e-10 71.2 143 32.2
Carub.0006s3546 Capsella rubella HOM05D009056 ORTHO05D011508 2.5e-10 70.5 167 32.3
A05p16860 Brassica napus HOM05D009350 ORTHO05D010513 3.2e-10 70.1 156 32.1
A05p16870 Brassica napus HOM05D009350 ORTHO05D010513 3.2e-10 70.1 156 32.1
C04p02040 Brassica napus HOM05D009272 ORTHO05D010513 3.2e-10 70.1 221 31.2
BolC4t21854H Brassica oleracea HOM05D009272 ORTHO05D010513 3.2e-10 70.1 221 31.2
BolC6t36881H Brassica oleracea HOM05D009350 ORTHO05D010513 3.2e-10 70.1 156 32.1
Thhalv10015280m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 3.2e-10 70.1 162 34.6
BcaB01g02097 Brassica carinata HOM05D009056 ORTHO05D011508 9.4e-10 68.6 143 30.8
Carub.0001s0160 Capsella rubella HOM05D009350 ORTHO05D010513 9.4e-10 68.6 140 36.4
BcaB01g02112 Brassica carinata HOM05D009056 ORTHO05D011508 1.6e-09 67.8 148 30.4
BcaC08g44266 Brassica carinata HOM05D009350 ORTHO05D010513 2.1e-09 67.4 164 31.1
BcaB01g03533 Brassica carinata HOM05D009272 ORTHO05D010513 2.7e-09 67.0 160 31.9
BolC6t36880H Brassica oleracea HOM05D009350 ORTHO05D010513 2.7e-09 67.0 170 30.0
BcaB05g22500 Brassica carinata HOM05D007865 ORTHO05D010123 6.1e-09 65.9 93 46.2
BcaC02g12720 Brassica carinata HOM05D009272 ORTHO05D010513 6.1e-09 65.9 184 31.0
A05p01760 Brassica napus HOM05D009272 ORTHO05D010513 8.0e-09 65.5 197 29.4
BraA05t19173Z Brassica rapa HOM05D009272 ORTHO05D010513 8.0e-09 65.5 197 29.4
BcaC04g24073 Brassica carinata HOM05D009056 ORTHO05D011508 1.0e-08 65.1 133 32.3
BcaC05g24482 Brassica carinata HOM05D009272 ORTHO05D010513 1.4e-08 64.7 182 29.1
A09p01390 Brassica napus HOM05D009056 ORTHO05D027233 2.3e-08 63.9 152 30.9
BraA09t35803Z Brassica rapa HOM05D009056 ORTHO05D027233 2.3e-08 63.9 152 30.9
COL.COLO4_15554 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.3e-08 63.9 187 32.6
BraA05t19178Z Brassica rapa HOM05D009272 ORTHO05D010513 1.2e-07 61.6 192 29.7
AT5G18300 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 1.5e-07 61.2 152 31.6
BcaB02g06924 Brassica carinata HOM05D009272 ORTHO05D010513 1.5e-07 61.2 114 35.1
BraA03t12330Z Brassica rapa HOM05D009056 ORTHO05D011508 1.5e-07 61.2 129 31.8
TAR362G1033 Trochodendron aralioides HOM05D007865 ORTHO05D013286 1.5e-07 61.2 192 30.2
BcaC04g24061 Brassica carinata HOM05D009056 ORTHO05D027233 2.6e-07 60.5 152 29.6
BolC9t53084H Brassica oleracea HOM05D009056 ORTHO05D027233 2.6e-07 60.5 152 29.6
A05p01800 Brassica napus HOM05D009272 ORTHO05D010513 3.4e-07 60.1 194 28.9
Thecc.10G077200 Theobroma cacao HOM05D028483 ORTHO05D013286 3.4e-07 60.1 182 30.8
Thecc.05G197000 Theobroma cacao HOM05D018692 ORTHO05D013286 4.4e-07 59.7 187 29.4
Thecc.10G077600 Theobroma cacao HOM05D028483 ORTHO05D013286 4.4e-07 59.7 131 34.4
C04p02100 Brassica napus HOM05D009272 ORTHO05D010513 5.7e-07 59.3 220 28.6
AL6G29530 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 7.5e-07 58.9 153 32.0
FAN06G1051 Fragaria x ananassa HOM05D002523 ORTHO05D002951 9.8e-07 58.5 222 25.2
FvH4_7g18070 Fragaria vesca HOM05D000010 ORTHO05D016284 3.7e-06 56.6 192 25.5
AT1G03490 Arabidopsis thaliana HOM05D009272 ORTHO05D010513 6.3e-06 55.8 197 26.4
Cpa.g.sc113.19 Carica papaya HOM05D000010 ORTHO05D013286 8.3e-06 55.5 175 31.4


User provided reference genes

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