Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14042 Brassica carinata HOM05D007865 ORTHO05D010123 1.0e-152 543.5 295 100.0
C02p12860 Brassica napus HOM05D007865 ORTHO05D010123 2.4e-146 522.3 295 93.9
BolC2t07384H Brassica oleracea HOM05D007865 ORTHO05D010123 1.7e-144 516.2 295 92.5
BcaC03g14051 Brassica carinata HOM05D007865 ORTHO05D010123 8.5e-144 513.8 295 91.5
BcaC03g14053 Brassica carinata HOM05D007865 ORTHO05D010123 6.7e-141 504.2 295 90.8
A02p07380 Brassica napus HOM05D007865 ORTHO05D010123 6.7e-141 504.2 295 90.2
BraA02t05817Z Brassica rapa HOM05D007865 ORTHO05D010123 6.7e-141 504.2 295 90.2
BcaC03g14047 Brassica carinata HOM05D007865 ORTHO05D010123 2.0e-140 502.7 295 90.2
C02p12890 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-138 496.9 299 92.6
BolC2t07382H Brassica oleracea HOM05D007865 ORTHO05D010123 3.5e-137 491.9 267 99.3
C02p12920 Brassica napus HOM05D007865 ORTHO05D010123 3.3e-132 475.3 291 90.4
BolC2t07395H Brassica oleracea HOM05D007865 ORTHO05D010123 2.2e-128 462.6 268 91.4
BcaC03g14044 Brassica carinata HOM05D007865 ORTHO05D010123 7.2e-127 457.6 267 90.6
BolC2t07386H Brassica oleracea HOM05D007865 ORTHO05D010123 7.2e-127 457.6 267 90.6
A02p07230 Brassica napus HOM05D007865 ORTHO05D010123 2.7e-126 455.7 265 91.3
A02p07240 Brassica napus HOM05D007865 ORTHO05D010123 6.1e-126 454.5 265 91.3
A02p07250 Brassica napus HOM05D007865 ORTHO05D010123 6.1e-126 454.5 265 90.9
BraA02t05803Z Brassica rapa HOM05D007865 ORTHO05D010123 3.0e-125 452.2 265 90.6
BraA02t05804Z Brassica rapa HOM05D007865 ORTHO05D010123 1.5e-124 449.9 265 90.2
BcaC03g14023 Brassica carinata HOM05D007865 ORTHO05D010123 6.3e-123 444.5 296 83.1
BraA02t05802Z Brassica rapa HOM05D007865 ORTHO05D010123 9.5e-119 430.6 251 91.2
C02p12610 Brassica napus HOM05D007865 ORTHO05D010123 1.4e-114 416.8 232 90.5
BolC2t07397H Brassica oleracea HOM05D007865 ORTHO05D010123 2.1e-102 376.3 212 90.1
BolC2t07361H Brassica oleracea HOM05D007865 ORTHO05D010123 3.1e-101 372.5 203 96.6
BcaB05g22473 Brassica carinata HOM05D007865 ORTHO05D010123 9.8e-100 367.5 309 68.6
BcaB05g22474 Brassica carinata HOM05D007865 ORTHO05D010123 4.0e-93 345.5 324 64.8
C02p12900 Brassica napus HOM05D007865 ORTHO05D010123 1.7e-83 313.5 177 93.8
BcaB05g22471 Brassica carinata HOM05D007865 ORTHO05D010123 1.5e-71 273.9 318 55.7
BcaC03g14024 Brassica carinata HOM05D007865 ORTHO05D010123 5.6e-71 271.9 148 95.9
BolC2t07362H Brassica oleracea HOM05D007865 ORTHO05D010123 5.6e-71 271.9 148 95.9
C02p12910 Brassica napus HOM05D007865 ORTHO05D010123 9.0e-69 264.6 150 94.7
BcaC03g14025 Brassica carinata HOM05D007865 ORTHO05D010123 6.7e-48 195.3 121 84.3
Thhalv10015599m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.4e-42 177.6 229 50.7
BolC9t57977H Brassica oleracea HOM05D007865 ORTHO05D010123 1.4e-40 171.0 200 50.5
C09p51140 Brassica napus HOM05D007865 ORTHO05D010123 3.9e-40 169.5 200 50.0
A10p15310 Brassica napus HOM05D007865 ORTHO05D010123 6.7e-40 168.7 200 50.0
A10p15300 Brassica napus HOM05D007865 ORTHO05D010123 7.4e-39 165.2 200 48.5
BraA10t43702Z Brassica rapa HOM05D007865 ORTHO05D010123 7.4e-39 165.2 200 48.5
BcaB08g36307 Brassica carinata HOM05D007865 ORTHO05D010123 1.3e-38 164.5 237 43.9
AL4G20480 Arabidopsis lyrata HOM05D014137 ORTHO05D010123 4.8e-38 162.5 160 54.4
AL4G20500 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 4.8e-38 162.5 160 54.4
BcaB01g02171 Brassica carinata HOM05D007865 ORTHO05D010123 6.3e-38 162.2 213 47.9
Thhalv10015349m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 9.1e-37 158.3 226 44.7
AL8G35160 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.0e-36 157.1 171 52.0
CARHR273100 Cardamine hirsuta HOM05D007865 ORTHO05D010123 6.5e-35 152.1 230 44.8
Thhalv10015750m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.1e-34 151.4 177 52.5
BcaB05g22499 Brassica carinata HOM05D007865 ORTHO05D010123 7.9e-33 145.2 96 79.2
AL8G35690 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 5.1e-32 142.5 142 53.5
C09p51150 Brassica napus HOM05D007865 ORTHO05D010123 8.8e-32 141.7 144 55.6
BolC9t57975H Brassica oleracea HOM05D007865 ORTHO05D010123 2.6e-31 140.2 200 45.0
Carub.0008s1968 Capsella rubella HOM05D007865 ORTHO05D010123 1.1e-29 134.8 158 48.7
Carub.0008s1992 Capsella rubella HOM05D007865 ORTHO05D010123 1.1e-29 134.8 158 48.7
BcaB03g13835 Brassica carinata HOM05D007865 ORTHO05D010123 2.0e-28 130.6 126 59.5
Thhalv10015954m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 5.9e-28 129.0 158 48.7
BolC2t07399H Brassica oleracea HOM05D007865 ORTHO05D010123 2.9e-27 126.7 69 91.3
Thhalv10028104m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 3.8e-27 126.3 148 50.7
BraA10t43701Z Brassica rapa HOM05D007865 ORTHO05D010123 1.1e-26 124.8 198 43.4
BolC2t07398H Brassica oleracea HOM05D007865 ORTHO05D010123 3.2e-26 123.2 97 77.3
Thhalv10028345m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.6e-25 120.9 144 50.0
AL8G35420 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.1e-25 120.6 161 42.2
Carub.0006s1626 Capsella rubella HOM05D007865 ORTHO05D010123 7.2e-18 95.5 163 38.0
Carub.0001s0263 Capsella rubella HOM05D007865 ORTHO05D010513 8.8e-16 88.6 185 33.5
Thhalv10009374m.g Eutrema salsugineum HOM05D009272 ORTHO05D010513 2.6e-15 87.0 158 37.3
BcaB02g07852 Brassica carinata HOM05D009350 ORTHO05D010513 3.4e-15 86.7 165 33.9
SpUn1022_0010 Schrenkiella parvula HOM05D007865 ORTHO05D010123 5.7e-15 85.9 56 71.4
THA.LOC104813384 Tarenaya hassleriana HOM05D007865 ORTHO05D010123 9.7e-15 85.1 161 34.2
C06p16700 Brassica napus HOM05D009350 ORTHO05D010513 6.3e-14 82.4 166 34.9
BolC6t36869H Brassica oleracea HOM05D009350 ORTHO05D010513 6.3e-14 82.4 166 34.9
AT3G46565 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 8.3e-14 82.0 86 51.2
BraA05t20584Z Brassica rapa HOM05D009350 ORTHO05D010513 8.3e-14 82.0 187 34.2
A05p16790 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-13 81.6 184 34.2
A05p16800 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-13 81.6 184 34.2
A05p16820 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-13 81.6 184 34.2
C06p16850 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-13 81.6 187 34.2
BraA05t20583Z Brassica rapa HOM05D009350 ORTHO05D010513 1.1e-13 81.6 166 34.9
BraA05t20585Z Brassica rapa HOM05D009350 ORTHO05D010513 1.1e-13 81.6 166 34.9
BraA05t20590Z Brassica rapa HOM05D009350 ORTHO05D010513 1.1e-13 81.6 184 34.2
BcaC08g44261 Brassica carinata HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
BcaC08g44264 Brassica carinata HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
BcaC08g44265 Brassica carinata HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
BcaC08g44267 Brassica carinata HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
C06p16770 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
C06p16790 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-13 81.3 166 34.9
C06p16820 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
BolC6t36876H Brassica oleracea HOM05D009350 ORTHO05D010513 1.4e-13 81.3 187 34.2
BolC6t36877H Brassica oleracea HOM05D009350 ORTHO05D010513 1.4e-13 81.3 166 34.9
CARHR249930 Cardamine hirsuta HOM05D009056 ORTHO05D011508 2.4e-13 80.5 149 36.2
C05p01970 Brassica napus HOM05D009272 ORTHO05D015471 3.1e-13 80.1 167 33.5
C05p02270 Brassica napus HOM05D009272 ORTHO05D015471 3.1e-13 80.1 167 33.5
BcaB05g22472 Brassica carinata HOM05D007865 ORTHO05D010123 7.0e-13 79.0 47 78.7
BcaB02g06921 Brassica carinata HOM05D009272 ORTHO05D015471 9.1e-13 78.6 188 31.9
BcaB02g06922 Brassica carinata HOM05D009272 ORTHO05D015471 9.1e-13 78.6 188 31.9
BcaB02g06923 Brassica carinata HOM05D009272 ORTHO05D010123 9.1e-13 78.6 188 31.9
BcaB02g06925 Brassica carinata HOM05D009272 ORTHO05D015471 9.1e-13 78.6 188 31.9
AL6G29200 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 1.2e-12 78.2 164 34.8
AT1G35890 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 1.2e-12 78.2 108 41.7
BolC5t29005H Brassica oleracea HOM05D009272 ORTHO05D015471 1.2e-12 78.2 167 32.9
CARHR289550 Cardamine hirsuta HOM05D009350 ORTHO05D010513 1.6e-12 77.8 170 34.1
BcaC05g24525 Brassica carinata HOM05D009272 ORTHO05D015471 2.0e-12 77.4 167 32.9
BolC5t28976H Brassica oleracea HOM05D009272 ORTHO05D015471 2.0e-12 77.4 167 32.9
A10p02020 Brassica napus HOM05D009272 ORTHO05D015471 4.5e-12 76.3 167 32.9
A10p02460 Brassica napus HOM05D009272 ORTHO05D015471 4.5e-12 76.3 167 32.9
THA.LOC104806001 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 4.5e-12 76.3 144 31.2
THA.LOC104806002 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 4.5e-12 76.3 144 31.2
THA.LOC104818129 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.9e-12 75.9 144 31.2
BraA10t42475Z Brassica rapa HOM05D009272 ORTHO05D015471 7.7e-12 75.5 181 32.6
Thhalv10015280m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.0e-11 75.1 163 36.2
CiPaw.01G116900 Carya illinoinensis HOM05D007865 ORTHO05D011589 1.3e-11 74.7 167 32.3
Thhalv10017056m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 1.3e-11 74.7 143 36.4
Thhalv10017700m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 1.3e-11 74.7 143 36.4
Thhalv10017733m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 1.3e-11 74.7 143 36.4
AL1G12990 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 1.7e-11 74.3 137 34.3
AL1G13550 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 1.7e-11 74.3 137 34.3
Thhalv10029188m.g Eutrema salsugineum HOM05D009056 ORTHO05D011508 2.9e-11 73.6 130 35.4
TAR362G0680 Trochodendron aralioides HOM05D000010 ORTHO05D001550 3.8e-11 73.2 190 33.2
Sp6g01800 Schrenkiella parvula HOM05D009056 ORTHO05D011508 5.0e-11 72.8 154 34.4
BcaC02g12724 Brassica carinata HOM05D009272 ORTHO05D010513 6.5e-11 72.4 143 35.0
BcaC04g24060 Brassica carinata HOM05D009056 ORTHO05D011508 6.5e-11 72.4 142 30.3
A05p16860 Brassica napus HOM05D009350 ORTHO05D010513 6.5e-11 72.4 156 33.3
A05p16870 Brassica napus HOM05D009350 ORTHO05D010513 6.5e-11 72.4 156 33.3
C04p02040 Brassica napus HOM05D009272 ORTHO05D010513 6.5e-11 72.4 143 35.0
C09p01500 Brassica napus HOM05D009056 ORTHO05D011508 6.5e-11 72.4 142 30.3
BolC4t21854H Brassica oleracea HOM05D009272 ORTHO05D010513 6.5e-11 72.4 143 35.0
BolC6t36881H Brassica oleracea HOM05D009350 ORTHO05D010513 8.5e-11 72.0 156 33.3
BolC4t21858H Brassica oleracea HOM05D009272 ORTHO05D010513 1.9e-10 70.9 143 34.3
BolC9t53085H Brassica oleracea HOM05D009056 ORTHO05D011508 2.5e-10 70.5 143 32.2
C09p01340 Brassica napus HOM05D009056 ORTHO05D011508 3.2e-10 70.1 133 33.1
BraA09t35794Z Brassica rapa HOM05D009056 ORTHO05D011508 3.2e-10 70.1 154 33.1
BcaC08g44266 Brassica carinata HOM05D009350 ORTHO05D010513 4.2e-10 69.7 185 31.9
BolC6t36880H Brassica oleracea HOM05D009350 ORTHO05D010513 5.5e-10 69.3 170 31.2
Carub.0001s0160 Capsella rubella HOM05D009350 ORTHO05D010513 5.5e-10 69.3 159 35.8
A09p01400 Brassica napus HOM05D009056 ORTHO05D011508 9.4e-10 68.6 143 31.5
BraA09t35804Z Brassica rapa HOM05D009056 ORTHO05D011508 9.4e-10 68.6 143 31.5
Carub.0006s3546 Capsella rubella HOM05D009056 ORTHO05D011508 1.6e-09 67.8 167 31.7
BcaB01g03533 Brassica carinata HOM05D009272 ORTHO05D010513 2.7e-09 67.0 159 31.4
BcaC02g12720 Brassica carinata HOM05D009272 ORTHO05D010513 2.7e-09 67.0 163 30.7
BcaB05g22500 Brassica carinata HOM05D007865 ORTHO05D010123 3.6e-09 66.6 93 47.3
BcaB01g02097 Brassica carinata HOM05D009056 ORTHO05D011508 1.0e-08 65.1 143 30.1
BcaB01g02112 Brassica carinata HOM05D009056 ORTHO05D011508 1.8e-08 64.3 148 29.7
BcaC04g24073 Brassica carinata HOM05D009056 ORTHO05D011508 1.8e-08 64.3 133 32.3
A05p01760 Brassica napus HOM05D009272 ORTHO05D010513 2.3e-08 63.9 142 31.7
BraA05t19173Z Brassica rapa HOM05D009272 ORTHO05D010513 2.3e-08 63.9 142 31.7
C04p02100 Brassica napus HOM05D009272 ORTHO05D010513 3.0e-08 63.5 132 33.3
BcaC05g24482 Brassica carinata HOM05D009272 ORTHO05D010513 4.0e-08 63.2 182 29.1
COL.COLO4_15554 Corchorus olitorius HOM05D002641 ORTHO05D001537 6.8e-08 62.4 187 33.2
BraA05t19178Z Brassica rapa HOM05D009272 ORTHO05D010513 8.8e-08 62.0 171 29.8
AT5G18300 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 1.5e-07 61.2 154 33.1
BcaB02g06924 Brassica carinata HOM05D009272 ORTHO05D010513 1.5e-07 61.2 114 35.1
A05p01800 Brassica napus HOM05D009272 ORTHO05D010513 3.4e-07 60.1 171 29.2
BraA03t12330Z Brassica rapa HOM05D009056 ORTHO05D011508 4.4e-07 59.7 129 31.0
A09p01390 Brassica napus HOM05D009056 ORTHO05D027233 5.7e-07 59.3 152 28.9
BraA09t35803Z Brassica rapa HOM05D009056 ORTHO05D027233 5.7e-07 59.3 152 28.9
TAR362G1033 Trochodendron aralioides HOM05D007865 ORTHO05D013286 9.8e-07 58.5 192 30.2
AT1G03490 Arabidopsis thaliana HOM05D009272 ORTHO05D010513 1.3e-06 58.2 90 37.8
Thecc.10G077600 Theobroma cacao HOM05D028483 ORTHO05D013286 2.8e-06 57.0 132 35.6
FvH4_3g25830 Fragaria vesca HOM05D000010 ORTHO05D005236 3.7e-06 56.6 166 28.3
FAN11G1134 Fragaria x ananassa HOM05D000010 ORTHO05D005236 3.7e-06 56.6 166 28.3
BcaC04g24061 Brassica carinata HOM05D009056 ORTHO05D027233 6.3e-06 55.8 152 27.6
BolC9t53084H Brassica oleracea HOM05D009056 ORTHO05D027233 6.3e-06 55.8 152 27.6
Peaxi162Scf00875g00111 Petunia axillaris HOM05D000010 ORTHO05D003912 6.3e-06 55.8 180 31.1
FAN16G0841 Fragaria x ananassa HOM05D000010 ORTHO05D005236 8.3e-06 55.5 166 27.7
Thecc.05G197000 Theobroma cacao HOM05D018692 ORTHO05D013286 8.3e-06 55.5 187 28.3


User provided reference genes

Program Settings