Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14016 Brassica carinata HOM05D002386 ORTHO05D019851 1.1e-72 276.6 140 100.0
BcaC09g48732 Brassica carinata HOM05D002386 ORTHO05D019851 1.1e-72 276.6 140 100.0
C01p46500 Brassica napus HOM05D002386 ORTHO05D019851 1.1e-72 276.6 140 100.0
BolC2t07354H Brassica oleracea HOM05D002386 ORTHO05D019851 1.1e-72 276.6 140 100.0
BcaC04g20382 Brassica carinata HOM05D002386 ORTHO05D019851 2.7e-71 271.9 140 98.6
BolC9t57299H Brassica oleracea HOM05D002386 ORTHO05D019851 2.7e-71 271.9 140 98.6
A01p14640 Brassica napus HOM05D002386 ORTHO05D006475 6.2e-60 234.2 136 91.9
BraA01t01404Z Brassica rapa HOM05D002386 ORTHO05D006475 6.2e-60 234.2 136 91.9
BcaC09g51001 Brassica carinata HOM05D002386 ORTHO05D019851 3.1e-59 231.9 138 89.1
C01p18140 Brassica napus HOM05D002386 ORTHO05D006475 3.1e-59 231.9 138 89.1
BolC1t01741H Brassica oleracea HOM05D002386 ORTHO05D006475 3.1e-59 231.9 138 89.1
BcaNung00971 Brassica carinata HOM05D002386 ORTHO05D006475 3.2e-56 221.9 140 86.4
Thhalv10024327m.g Eutrema salsugineum HOM05D002386 ORTHO05D006475 6.2e-44 181.0 155 74.2
Sp7g21340 Schrenkiella parvula HOM05D002386 ORTHO05D006475 6.9e-43 177.6 158 70.9
AT4G23440 Arabidopsis thaliana HOM05D002386 ORTHO05D006475 2.2e-41 172.6 156 69.2
AL7G30020 Arabidopsis lyrata HOM05D002386 ORTHO05D006475 4.9e-41 171.4 156 68.6
Carub.0007s1763 Capsella rubella HOM05D002386 ORTHO05D006475 4.2e-40 168.3 162 68.5
CARHR230770 Cardamine hirsuta HOM05D002386 ORTHO05D006475 1.7e-38 162.9 155 67.7
Aa31LG6G6630 Aethionema arabicum HOM05D002386 ORTHO05D006475 1.6e-36 156.4 160 61.9
C07p52670 Brassica napus HOM05D002386 ORTHO05D006475 2.0e-34 149.4 139 66.9
BolC7t45768H Brassica oleracea HOM05D002386 ORTHO05D006475 2.0e-34 149.4 139 66.9
A03p54290 Brassica napus HOM05D002386 ORTHO05D006475 5.8e-34 147.9 140 67.9
BraA03t14491Z Brassica rapa HOM05D002386 ORTHO05D006475 5.8e-34 147.9 140 67.9
BcaNung01440 Brassica carinata HOM05D002386 ORTHO05D006475 3.2e-32 142.1 139 66.2
THA.LOC104814630 Tarenaya hassleriana HOM05D002386 ORTHO05D006475 6.2e-28 127.9 144 60.4
C03p30150 Brassica napus HOM05D002386 ORTHO05D006475 8.4e-25 117.5 63 98.4
C08p25610 Brassica napus HOM05D002386 ORTHO05D006475 8.4e-25 117.5 63 98.4
Cpa.g.sc214.13 Carica papaya HOM05D002386 ORTHO05D006475 6.2e-20 101.3 185 44.3
GSVIVG01029435001 Vitis vinifera HOM05D002386 ORTHO05D006475 1.5e-18 96.7 158 49.4
MD14G1107900 Malus domestica HOM05D002386 ORTHO05D006475 4.5e-18 95.1 187 42.8
MD06G1086700 Malus domestica HOM05D002386 ORTHO05D006475 1.3e-17 93.6 187 42.2
Prupe.5G103200 Prunus persica HOM05D002386 ORTHO05D006475 3.8e-17 92.0 186 42.5
Potri.003G129600 Populus trichocarpa HOM05D002386 ORTHO05D006475 4.9e-17 91.7 184 43.5
COL.COLO4_34212 Corchorus olitorius HOM05D002386 ORTHO05D006475 1.4e-16 90.1 186 41.9
Thecc.10G083600 Theobroma cacao HOM05D002386 ORTHO05D006475 1.4e-16 90.1 186 43.0
Cfa012209 Carpinus fangiana HOM05D002386 ORTHO05D006475 1.9e-16 89.7 187 42.8
TWI60G0569 Tripterygium wilfordii HOM05D002386 ORTHO05D006475 1.9e-16 89.7 187 41.7
Sabra03G0092100 Salix brachista HOM05D002386 ORTHO05D006475 2.5e-16 89.4 184 42.9
FAN04G1337 Fragaria x ananassa HOM05D002386 ORTHO05D006475 3.2e-16 89.0 186 40.9
FAN08G0637 Fragaria x ananassa HOM05D002386 ORTHO05D006475 3.2e-16 89.0 186 40.9
RcHm_v2.0_Chr7g0197191 Rosa chinensis HOM05D002386 ORTHO05D006475 3.2e-16 89.0 186 41.4
FvH4_5g02740 Fragaria vesca HOM05D002386 ORTHO05D006475 4.2e-16 88.6 186 40.9
FAN18G4077 Fragaria x ananassa HOM05D002386 ORTHO05D006475 4.2e-16 88.6 186 40.9
Gorai.011G236200 Gossypium raimondii HOM05D002386 ORTHO05D006475 5.5e-16 88.2 181 41.4
Ciclev10018685m.g Citrus clementina HOM05D002386 ORTHO05D006475 7.1e-16 87.8 190 42.6
Haze_08802 Corylus avellana HOM05D002386 ORTHO05D006475 7.1e-16 87.8 187 40.6
Gohir.D10G210700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 1.6e-15 86.7 181 40.9
QL12p032531 Quercus lobata HOM05D002386 ORTHO05D006475 2.1e-15 86.3 191 42.9
Gohir.A10G202500 Gossypium hirsutum HOM05D002386 ORTHO05D006475 2.7e-15 85.9 181 40.9
CiPaw.11G133200 Carya illinoinensis HOM05D002386 ORTHO05D006475 3.5e-15 85.5 187 40.6
Gohir.A05G411100 Gossypium hirsutum HOM05D002386 ORTHO05D006475 6.0e-15 84.7 172 43.6
Manes.02G021100 Manihot esculenta HOM05D002386 ORTHO05D006475 7.9e-15 84.3 186 43.0
CANSAT21G0111 Cannabis sativa HOM05D002386 ORTHO05D006475 1.3e-14 83.6 191 39.3
Dinv37624 Davidia involucrata HOM05D002386 ORTHO05D006475 1.3e-14 83.6 184 40.2
Gohir.A05G292900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 1.3e-14 83.6 176 40.9
DCAR_008370 Daucus carota HOM05D002386 ORTHO05D006475 3.9e-14 82.0 158 40.5
Gohir.D04G004900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 6.7e-14 81.3 173 41.6
Gorai.012G006200 Gossypium raimondii HOM05D002386 ORTHO05D006475 6.7e-14 81.3 173 41.6
Eucgr.D01831 Eucalyptus grandis HOM05D002386 ORTHO05D006475 8.7e-14 80.9 181 40.9
Lj2A183T64 Lonicera japonica HOM05D002386 ORTHO05D006475 8.7e-14 80.9 159 40.9
Sed0020631 Sechium edule HOM05D002386 ORTHO05D006475 8.7e-14 80.9 186 39.2
PGR031G0858 Punica granatum HOM05D002386 ORTHO05D006475 1.1e-13 80.5 163 42.9
Oeu011039.5 Olea europaea HOM05D002386 ORTHO05D006475 1.5e-13 80.1 139 42.4
Duzib106G2040 Durio zibethinus HOM05D002386 ORTHO05D006475 1.9e-13 79.7 186 40.9
Oeu042333.1 Olea europaea HOM05D002386 ORTHO05D006475 1.9e-13 79.7 146 41.8
TAR375G0570 Trochodendron aralioides HOM05D002386 ORTHO05D006475 1.9e-13 79.7 189 39.2
Gohir.D05G293700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 3.3e-13 79.0 176 39.2
CAN.G532.1 Capsicum annuum HOM05D002386 ORTHO05D006475 5.7e-13 78.2 182 38.5
Duzib128G1887 Durio zibethinus HOM05D002386 ORTHO05D006475 5.7e-13 78.2 185 40.5
TAR374G1581 Trochodendron aralioides HOM05D002386 ORTHO05D006475 9.6e-13 77.4 192 38.0
CsaV3_5G002670 Cucumis sativus L. HOM05D002386 ORTHO05D006475 1.3e-12 77.0 186 37.6
TAR629G3360 Trochodendron aralioides HOM05D002386 ORTHO05D006475 3.7e-12 75.5 191 39.8
ClCG01G002570 Citrullus lanatus HOM05D002386 ORTHO05D006475 4.8e-12 75.1 186 36.6
Cc08_g14930 Coffea canephora HOM05D002386 ORTHO05D006475 4.8e-12 75.1 156 37.8
Solyc08g081260.1 Solanum lycopersicum HOM05D002386 ORTHO05D006475 4.8e-12 75.1 181 36.5
Sopen08g029570 Solanum pennellii HOM05D002386 ORTHO05D006475 4.8e-12 75.1 181 36.5
Nitab4.5_0002975g0010 Nicotiana tabacum HOM05D002386 ORTHO05D006475 6.3e-12 74.7 182 37.9
PGSC0003DMG400012335 Solanum tuberosum HOM05D002386 ORTHO05D006475 6.3e-12 74.7 182 37.9
Nitab4.5_0001522g0130 Nicotiana tabacum HOM05D002386 ORTHO05D006475 1.1e-11 73.9 184 36.4
MELO3C005690.2 Cucumis melo HOM05D002386 ORTHO05D006475 1.8e-11 73.2 186 36.6
Gorai.009G310300 Gossypium raimondii HOM05D002386 ORTHO05D006475 1.8e-11 73.2 176 38.1
Lj4g0009407 Lotus japonicus HOM05D002386 ORTHO05D006475 1.8e-11 73.2 185 37.3
arahy.Tifrunner.gnm1.ann1.3CTT0B Arachis hypogaea HOM05D002386 ORTHO05D006475 3.1e-11 72.4 181 37.0
arahy.Tifrunner.gnm1.ann1.6I5Y8L Arachis hypogaea HOM05D002386 ORTHO05D006475 4.1e-11 72.0 181 37.0
Peaxi162Scf00074g02011 Petunia axillaris HOM05D002386 ORTHO05D006475 4.1e-11 72.0 182 37.9
ECA233G1635 Erigeron canadensis HOM05D002386 ORTHO05D006475 6.9e-11 71.2 155 41.3
Glyma.05G209250 Glycine max HOM05D002386 ORTHO05D006475 1.5e-10 70.1 187 38.5
Glyma.08G016000 Glycine max HOM05D002386 ORTHO05D006475 2.6e-10 69.3 188 37.8
Lsat_1_v5_gn_6_5340 Lactuca sativa HOM05D002386 ORTHO05D006475 5.9e-10 68.2 146 40.4
Atru.BG.189.p Acer truncatum HOM05D002386 ORTHO05D006475 1.0e-09 67.4 119 42.0
LjContig00312_ERROPOS870357g0000119 Lotus japonicus HOM05D002386 ORTHO05D006475 1.3e-09 67.0 171 38.0
Lalb_Chr16g0390111 Lupinus albus HOM05D002386 ORTHO05D006475 1.7e-09 66.6 189 35.4
Nn1g01575 Nelumbo nucifera HOM05D002386 ORTHO05D006475 2.2e-09 66.2 188 36.2
Phvul.002G158300 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 3.8e-09 65.5 185 34.1
HanXRQChr13g0394521 Helianthus annuus HOM05D002386 ORTHO05D006475 5.0e-09 65.1 147 37.4
Actinidia01993 Actinidia chinensis HOM05D002386 ORTHO05D006475 6.5e-09 64.7 183 35.5
Ah.07g196380 Amaranthus hybridus HOM05D002386 ORTHO05D006475 8.5e-09 64.3 167 34.1
VMungo1215G1453 Vigna mungo HOM05D002386 ORTHO05D006475 1.1e-08 63.9 185 34.1
CSS0029765 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.4e-08 63.5 184 35.3
CSS0033474 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.4e-08 63.5 184 35.3
Glyma.01G220900 Glycine max HOM05D002386 ORTHO05D006475 1.9e-08 63.2 185 35.1
Glyma.11G022700 Glycine max HOM05D002386 ORTHO05D006475 1.9e-08 63.2 187 34.8
Medtr8g098575 Medicago truncatula HOM05D002386 ORTHO05D006475 2.5e-08 62.8 177 35.6
Phvul.002G291100 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 2.5e-08 62.8 170 36.5
Hund14828 Selenicereus undatus HOM05D002386 ORTHO05D006475 2.5e-08 62.8 177 36.7
CSS0046375 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 4.2e-08 62.0 184 33.7
SEGI_33325 Sequoiadendron giganteum HOM05D002386 ORTHO05D006475 5.5e-08 61.6 197 33.5
VMungo0251G0364 Vigna mungo HOM05D002386 ORTHO05D006475 7.2e-08 61.2 171 37.4
Aqoxy7G00267 Aquilegia oxysepala HOM05D002386 ORTHO05D006475 1.6e-07 60.1 175 34.9
Psat7g031760 Pisum sativum HOM05D002386 ORTHO05D006475 1.6e-07 60.1 181 33.1
EL10Ac5g12796 Beta vulgaris HOM05D002386 ORTHO05D006475 2.1e-07 59.7 178 34.8
HanXRQChr10g0309131 Helianthus annuus HOM05D002386 ORTHO05D006475 2.7e-07 59.3 136 37.5
arahy.Tifrunner.gnm1.ann1.E5IT1X Arachis hypogaea HOM05D002386 ORTHO05D006475 3.6e-07 58.9 158 38.6
AUR62010703 Chenopodium quinoa HOM05D002386 ORTHO05D006475 4.6e-07 58.5 177 34.5
Ca_17514_v3 Cicer arietinum L. HOM05D002386 ORTHO05D006475 4.6e-07 58.5 161 34.8
MSTRG.25622 Avicennia marina HOM05D002386 ORTHO05D006475 7.9e-07 57.8 176 31.8
AUR62017182 Chenopodium quinoa HOM05D002386 ORTHO05D006475 1.0e-06 57.4 178 34.3
Rhsim07G0088900 Rhododendron simsii HOM05D002386 ORTHO05D006475 1.0e-06 57.4 140 34.3
ATR0680G256 Amborella trichopoda HOM05D002386 ORTHO05D006475 3.0e-06 55.8 43 55.8
FAN25G0463 Fragaria x ananassa HOM05D002386 ORTHO05D008413 3.0e-06 55.8 136 35.3
Ca_24548_v3 Cicer arietinum L. HOM05D002386 ORTHO05D006475 5.1e-06 55.1 163 34.4
Migut.E01078 Erythranthe guttata HOM05D002386 ORTHO05D006475 5.1e-06 55.1 112 33.9
PSO782G1050 Papaver somniferum HOM05D002386 ORTHO05D006475 5.1e-06 55.1 87 39.1
Lalb_Chr09g0320951 Lupinus albus HOM05D002386 ORTHO05D006475 6.7e-06 54.7 184 35.3


User provided reference genes

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