Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 1.6e-62 242.7 126 100.0
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.3e-61 239.6 124 100.0
BraA02t05790Z Brassica rapa HOM05D006754 ORTHO05D008403 8.4e-24 114.0 61 93.4
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 1.5e-17 93.2 94 61.7
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 2.6e-17 92.4 94 61.7
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 5.8e-17 91.3 94 60.6
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 9.9e-17 90.5 94 60.6
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 9.9e-17 90.5 94 60.6
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 9.9e-17 90.5 94 60.6
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 9.9e-17 90.5 94 61.7
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 2.2e-16 89.4 94 59.6
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 2.9e-16 89.0 94 60.6
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 3.8e-16 88.6 94 58.5
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 1.1e-15 87.0 94 59.6
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.4e-15 86.7 94 59.6
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 9.3e-15 84.0 94 58.5
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.7e-13 79.7 94 55.3
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 3.9e-13 78.6 94 54.3
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 8.7e-13 77.4 85 62.4
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 1.5e-12 76.6 94 53.2
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 1.5e-12 76.6 94 51.1
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 1.5e-12 76.6 94 50.0
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 2.5e-12 75.9 94 51.1
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 2.5e-12 75.9 94 51.1
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 7.4e-12 74.3 94 50.0
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 9.6e-12 73.9 94 51.1
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 9.6e-12 73.9 94 45.7
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 9.6e-12 73.9 94 50.0
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 1.3e-11 73.6 94 45.7
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 1.3e-11 73.6 94 45.7
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 1.6e-11 73.2 94 48.9
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.6e-11 73.2 94 48.9
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.6e-11 73.2 94 47.9
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 1.6e-11 73.2 94 48.9
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 2.1e-11 72.8 94 48.9
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 2.1e-11 72.8 92 47.8
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 2.8e-11 72.4 94 45.7
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 2.8e-11 72.4 94 45.7
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 2.8e-11 72.4 94 50.0
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 3.6e-11 72.0 91 48.4
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.6e-11 72.0 94 47.9
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 3.6e-11 72.0 94 47.9
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 3.6e-11 72.0 94 46.8
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 4.8e-11 71.6 94 46.8
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 6.2e-11 71.2 94 48.9
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.2e-11 71.2 94 46.8
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 8.1e-11 70.9 94 48.9
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 8.1e-11 70.9 94 44.7
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 8.1e-11 70.9 94 47.9
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 8.1e-11 70.9 94 45.7
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.1e-10 70.5 94 46.8
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.1e-10 70.5 94 46.8
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 1.4e-10 70.1 94 48.9
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 1.4e-10 70.1 94 47.9
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 1.8e-10 69.7 94 46.8
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 1.8e-10 69.7 94 46.8
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 1.8e-10 69.7 90 47.8
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 1.8e-10 69.7 94 46.8
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 2.4e-10 69.3 94 46.8
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 2.4e-10 69.3 94 43.6
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 47.9
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 47.9
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 46.8
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 46.8
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 46.8
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 3.1e-10 68.9 94 46.8
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 4.0e-10 68.6 94 47.9
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 4.0e-10 68.6 94 45.7
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 4.0e-10 68.6 94 44.7
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 5.3e-10 68.2 74 50.0
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 5.3e-10 68.2 94 45.7
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 5.3e-10 68.2 94 46.8
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 6.9e-10 67.8 94 46.8
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 6.9e-10 67.8 94 45.7
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 6.9e-10 67.8 94 45.7
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 9.0e-10 67.4 79 58.2
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 9.0e-10 67.4 79 58.2
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 9.0e-10 67.4 77 50.6
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.2e-09 67.0 94 45.7
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.2e-09 67.0 94 45.7
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 1.5e-09 66.6 94 43.6
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 1.5e-09 66.6 94 45.7
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 1.5e-09 66.6 94 45.7
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 1.5e-09 66.6 94 45.7
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 2.0e-09 66.2 94 41.5
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 2.6e-09 65.9 94 45.7
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 2.6e-09 65.9 94 45.7
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 2.6e-09 65.9 90 46.7
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 3.4e-09 65.5 94 44.7
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 3.4e-09 65.5 86 50.0
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 3.4e-09 65.5 94 43.6
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 4.5e-09 65.1 94 45.7
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 5.8e-09 64.7 94 44.7
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 7.6e-09 64.3 94 42.6
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 9.9e-09 63.9 87 48.3
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 2.9e-08 62.4 86 48.8
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.9e-08 62.4 94 41.5
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.8e-08 62.0 94 39.4
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.8e-08 62.0 94 39.4
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 1.1e-07 60.5 94 40.4
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 1.2e-06 57.0 94 39.4
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 2.1e-06 56.2 90 43.3


User provided reference genes

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