Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 1.9e-47 192.2 99 100.0
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 4.2e-47 191.0 99 99.0
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 7.2e-47 190.3 99 99.0
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 2.7e-46 188.3 99 98.0
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 4.1e-42 174.5 100 92.0
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 2.1e-38 162.2 99 85.9
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 4.7e-38 161.0 101 84.2
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 6.1e-38 160.6 99 84.8
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 5.2e-37 157.5 97 83.5
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 2.8e-35 151.8 101 80.2
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 4.9e-35 151.0 104 80.8
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 4.9e-35 151.0 104 80.8
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 6.3e-35 150.6 104 80.8
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 6.3e-35 150.6 104 80.8
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 8.3e-35 150.2 104 79.8
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 3.1e-34 148.3 102 80.4
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 3.1e-34 148.3 105 80.0
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 3.5e-33 144.8 102 78.4
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 3.8e-32 141.4 104 79.8
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 6.6e-32 140.6 99 75.8
BolC2t07271H Brassica oleracea HOM05D007887 ORTHO05D009725 3.0e-29 131.7 99 73.7
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 4.0e-29 131.3 102 71.6
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 1.2e-28 129.8 102 73.5
Carub.0008s2111 Capsella rubella HOM05D007887 ORTHO05D009725 7.0e-26 120.6 103 70.9
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 7.3e-23 110.5 101 65.3
C02p11740 Brassica napus HOM05D007887 ORTHO05D009725 1.6e-14 82.8 51 80.4
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 1.1e-13 80.1 101 51.5
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 7.5e-12 73.9 100 48.0
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.3e-11 73.2 100 48.0
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 3.7e-11 71.6 99 46.5
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 3.7e-11 71.6 101 46.5
THA.LOC104799488 Tarenaya hassleriana HOM05D007887 ORTHO05D009725 3.7e-11 71.6 106 48.1
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 6.4e-11 70.9 86 48.8
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 1.9e-10 69.3 101 46.5
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 1.9e-10 69.3 100 45.0
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 3.2e-10 68.6 102 47.1
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 4.1e-10 68.2 68 47.1
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 7.1e-10 67.4 100 44.0
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 9.2e-10 67.0 101 47.5
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 2.7e-09 65.5 101 44.6
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 2.7e-09 65.5 102 43.1
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 1.3e-08 63.2 73 43.8
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 3.9e-08 61.6 102 42.2
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 3.9e-08 61.6 104 44.2
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 8.6e-08 60.5 100 39.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.9e-07 59.3 102 42.2
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 1.9e-07 59.3 101 39.6
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 2.5e-07 58.9 102 41.2
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 4.3e-07 58.2 104 43.3
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 4.3e-07 58.2 98 43.9
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 4.3e-07 58.2 90 40.0
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 7.3e-07 57.4 102 42.2
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 2.1e-06 55.8 105 40.0
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 2.8e-06 55.5 96 40.6
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 4.7e-06 54.7 97 42.3
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 6.2e-06 54.3 97 40.2
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 6.2e-06 54.3 100 41.0


User provided reference genes

Program Settings