Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.3e-99 365.5 182 100.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.0e-66 256.1 221 67.0
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.0e-66 256.1 221 67.0
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.4e-64 250.0 221 65.6
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.4e-64 250.0 221 65.6
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.9e-61 239.6 221 63.3
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.9e-53 213.0 220 58.2
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.2e-50 203.8 222 55.0
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 3.2e-48 195.7 225 52.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.6e-47 193.4 225 52.4
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.7e-46 189.9 222 50.9
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.7e-46 189.9 225 51.1
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 8.9e-43 177.6 245 47.3
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 3.4e-42 175.6 193 51.8
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 7.5e-42 174.5 192 51.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 7.5e-42 174.5 211 47.9
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.9e-41 171.8 211 47.9
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 6.4e-41 171.4 193 49.2
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 8.3e-41 171.0 209 46.4
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.4e-40 170.2 193 49.7
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.9e-40 169.9 209 47.8
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.9e-40 169.9 211 47.4
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.4e-40 169.5 201 50.2
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 5.4e-40 168.3 193 48.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 9.2e-40 167.5 193 48.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 2.7e-39 166.0 194 48.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-39 165.6 218 48.6
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-39 165.6 218 48.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 3.5e-39 165.6 215 47.9
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 6.0e-39 164.9 209 45.9
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 7.8e-39 164.5 214 46.7
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.0e-38 164.1 190 48.4
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.0e-38 164.1 190 48.4
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.3e-38 163.7 202 46.5
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 2.3e-38 162.9 211 47.4
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 3.0e-38 162.5 193 48.7
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 5.1e-38 161.8 201 47.8
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 5.1e-38 161.8 190 50.5
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 6.6e-38 161.4 210 45.2
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.1e-37 160.6 200 48.5
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 1.1e-37 160.6 192 47.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 2.5e-37 159.5 190 50.5
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 7.3e-37 157.9 191 46.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.2e-36 157.1 226 45.6
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 1.2e-36 157.1 190 47.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.2e-36 157.1 211 45.0
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.6e-36 156.8 196 45.9
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.1e-36 156.4 196 44.9
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 2.8e-36 156.0 197 46.2
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.8e-36 156.0 215 44.7
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.8e-36 156.0 215 43.3
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 4.7e-36 155.2 193 47.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 8.1e-36 154.5 196 44.9
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 8.1e-36 154.5 196 45.9
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.1e-35 154.1 196 45.9
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.4e-35 153.7 218 43.6
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.4e-35 153.7 221 43.0
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.8e-35 153.3 218 43.1
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 4.0e-35 152.1 190 45.8
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 5.2e-35 151.8 192 45.8
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 6.8e-35 151.4 196 43.4
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 6.8e-35 151.4 201 44.8
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.8e-35 151.4 201 44.8
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.8e-35 151.4 201 44.8
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 8.9e-35 151.0 196 43.9
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.0e-34 149.8 207 43.0
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 4.4e-34 148.7 190 43.7
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 5.8e-34 148.3 190 45.3
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 5.8e-34 148.3 204 42.6
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 5.8e-34 148.3 201 42.8
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.3e-33 147.1 194 43.8
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.7e-33 146.7 190 44.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.9e-33 146.0 190 44.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 2.9e-33 146.0 209 41.1
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.1e-32 144.1 148 53.4
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.4e-32 143.7 189 43.9
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 2.1e-31 139.8 190 43.2
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.7e-31 139.4 195 43.1
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 2.7e-31 139.4 124 58.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.0e-30 137.5 200 42.5
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 6.6e-30 134.8 151 56.3
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.5e-29 133.7 111 59.5
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.5e-29 133.7 169 45.0
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 9.6e-29 131.0 67 94.0
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 9.6e-29 131.0 67 94.0
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.1e-28 129.8 152 48.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.6e-28 129.0 217 38.7
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 8.1e-28 127.9 111 58.6
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.0e-27 125.6 152 46.7
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 5.2e-27 125.2 187 41.7
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 3.4e-26 122.5 74 90.5
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 5.8e-26 121.7 140 47.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 7.6e-26 121.3 214 36.9
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 2.9e-25 119.4 148 50.0
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 2.9e-25 119.4 214 36.0
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.2e-24 115.9 188 36.2
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 5.4e-24 115.2 188 37.2
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.6e-23 113.6 188 35.6
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.1e-23 113.2 185 38.9
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 4.6e-23 112.1 214 35.5
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.1e-21 107.5 179 38.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 7.3e-21 104.8 124 50.8
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.0e-18 96.7 134 42.5
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.2e-17 93.2 133 42.9
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.9e-16 90.1 166 34.3
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 3.3e-13 79.3 123 38.2
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.3e-12 77.4 82 47.6
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 2.1e-12 76.6 44 86.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.4e-11 73.9 71 53.5
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 6.9e-11 71.6 111 42.3
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.5e-10 68.9 43 81.4
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 3.0e-06 56.2 105 36.2


User provided reference genes

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