Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 6.3e-30 133.3 60 100.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 6.6e-27 123.2 74 79.7
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.1e-25 118.2 74 77.0
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.0e-24 115.9 71 78.9
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-24 114.4 74 75.7
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 7.5e-23 109.8 74 73.0
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 7.5e-23 109.8 74 73.0
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 7.5e-23 109.8 74 73.0
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 9.8e-23 109.4 74 73.0
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.3e-22 109.0 74 71.6
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.3e-22 109.0 74 71.6
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.2e-22 108.2 74 71.6
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 2.9e-22 107.8 74 70.3
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.9e-22 107.8 74 71.6
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.7e-22 107.5 74 70.3
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.7e-22 107.5 74 70.3
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.7e-22 107.5 74 70.3
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.7e-22 107.5 74 70.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 6.4e-22 106.7 74 68.9
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 6.4e-22 106.7 78 67.9
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 6.4e-22 106.7 74 68.9
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 70.3
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 8.3e-22 106.3 74 68.9
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-21 105.5 72 72.2
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.4e-21 105.5 72 72.2
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 68.9
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 67.6
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 67.6
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 68.9
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 68.9
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 67.6
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 68.9
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.4e-21 105.5 74 68.9
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 67.6
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 67.6
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 67.6
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 67.6
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 67.6
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 68.9
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 68.9
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.9e-21 105.1 74 68.9
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 2.4e-21 104.8 74 66.2
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.4e-21 104.8 74 66.2
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 3.2e-21 104.4 74 67.6
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 4.1e-21 104.0 85 62.4
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 4.1e-21 104.0 74 67.6
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 4.1e-21 104.0 74 67.6
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 4.1e-21 104.0 74 67.6
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 4.1e-21 104.0 73 67.1
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 66.2
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 66.2
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 67.6
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 66.2
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 67.6
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 5.4e-21 103.6 74 66.2
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 7.0e-21 103.2 74 66.2
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 7.0e-21 103.2 74 66.2
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.0e-21 103.2 72 68.1
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 7.0e-21 103.2 73 67.1
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 9.2e-21 102.8 74 64.9
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 9.2e-21 102.8 74 66.2
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.2e-20 102.4 74 64.9
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.2e-20 102.4 74 64.9
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.2e-20 102.4 74 64.9
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.2e-20 102.4 74 66.2
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.6e-20 102.1 74 66.2
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.6e-20 102.1 74 64.9
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.6e-20 102.1 74 64.9
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.6e-20 102.1 74 64.9
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.6e-20 102.1 74 64.9
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.0e-20 101.7 74 64.9
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 2.0e-20 101.7 74 64.9
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 2.0e-20 101.7 74 64.9
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.7e-20 101.3 74 64.9
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 3.5e-20 100.9 74 63.5
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 4.6e-20 100.5 75 61.3
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 4.6e-20 100.5 73 64.4
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 4.6e-20 100.5 74 63.5
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 6.0e-20 100.1 74 62.2
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 6.0e-20 100.1 75 61.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 6.0e-20 100.1 75 61.3
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 7.8e-20 99.8 74 64.9
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.0e-19 99.4 73 63.0
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.3e-19 99.0 74 63.5
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.3e-19 99.0 74 62.2
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.7e-19 98.6 72 65.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.3e-19 98.2 74 63.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 3.0e-19 97.8 74 62.2
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 3.9e-19 97.4 74 63.5
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 5.0e-19 97.1 74 63.5
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 8.6e-19 96.3 74 60.8
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.1e-18 95.9 74 64.9
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.9e-18 95.1 74 62.2
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.9e-18 95.1 74 58.1
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 2.5e-18 94.7 74 60.8
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.3e-18 94.4 74 60.8
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.3e-18 94.4 74 60.8
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 4.3e-18 94.0 74 58.1
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.3e-18 94.0 67 67.2
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.6e-17 92.0 72 59.7
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.1e-17 91.7 73 57.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 7.5e-15 83.2 72 51.4
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-10 69.3 29 96.6
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 2.5e-10 68.2 79 48.1
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 4.7e-09 63.9 60 53.3
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.1e-08 62.8 49 55.1
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.4e-08 62.4 58 55.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 1.4e-08 62.4 58 55.2
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 6.8e-08 60.1 30 93.3
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 6.8e-08 60.1 30 93.3
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 8.9e-08 59.7 68 45.6
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.4e-07 57.8 30 86.7


User provided reference genes

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