Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 3.9e-44 181.0 89 100.0
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 2.2e-31 138.7 71 95.8
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 2.2e-31 138.7 71 95.8
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.5e-11 70.5 37 89.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.8e-10 68.6 40 80.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-10 67.8 37 86.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 4.9e-10 67.8 37 86.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.9e-10 67.8 37 86.5
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.3e-10 67.4 37 83.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.3e-10 67.4 49 67.3
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.3e-10 67.0 40 77.5
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.3e-10 67.0 37 83.8
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-09 66.2 37 83.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.8e-09 65.9 36 83.3
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-09 65.5 37 83.8
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.4e-09 65.5 37 83.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.1e-09 65.1 37 81.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.1e-09 65.1 37 81.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.1e-09 65.1 37 81.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.1e-09 65.1 37 81.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 3.1e-09 65.1 37 81.1
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-09 64.3 37 81.1
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.4e-09 64.3 37 81.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 5.4e-09 64.3 37 81.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 5.4e-09 64.3 37 81.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 7.0e-09 63.9 37 78.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.0e-09 63.9 37 78.4
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 9.2e-09 63.5 37 75.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.2e-08 63.2 37 78.4
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.6e-08 62.8 36 80.6
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.6e-08 62.8 36 80.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.6e-08 62.8 36 80.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 4.5e-08 61.2 37 73.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-07 59.3 37 70.3
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.0e-07 57.8 35 74.3
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.0e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 6.6e-07 57.4 35 71.4
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 6.6e-07 57.4 40 65.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 6.6e-07 57.4 40 65.0
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 6.6e-07 57.4 36 69.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 6.6e-07 57.4 36 69.4
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 8.6e-07 57.0 48 56.2
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.6e-07 57.0 52 57.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 8.6e-07 57.0 35 71.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.1e-06 56.6 35 71.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.5e-06 56.2 35 71.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.9e-06 55.8 40 62.5
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.9e-06 55.8 40 65.0
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.5e-06 55.5 35 68.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.5e-06 55.5 40 62.5
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.5e-06 55.5 40 62.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.5e-06 55.5 35 68.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.3e-06 55.1 35 68.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 4.3e-06 54.7 37 64.9
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.6e-06 54.3 40 60.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.3e-06 53.9 35 68.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.3e-06 53.9 35 68.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 7.3e-06 53.9 35 65.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 7.3e-06 53.9 34 70.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 7.3e-06 53.9 48 54.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 9.5e-06 53.5 35 65.7
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 9.5e-06 53.5 35 68.6


User provided reference genes

Program Settings