Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 9.7e-87 323.6 176 100.0
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 4.5e-60 235.0 173 79.2
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 1.3e-59 233.4 158 82.9
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 2.1e-57 226.1 171 75.4
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 4.9e-54 214.9 239 57.3
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 1.1e-50 203.8 166 70.5
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 1.1e-50 203.8 230 57.4
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 7.3e-50 201.1 239 54.4
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 4.4e-47 191.8 230 55.7
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 4.4e-47 191.8 230 55.7
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 4.4e-47 191.8 230 55.7
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 4.4e-47 191.8 197 57.9
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 5.8e-47 191.4 194 59.8
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 1.3e-46 190.3 196 59.7
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 2.9e-46 189.1 199 57.3
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 3.7e-46 188.7 161 68.3
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 3.7e-46 188.7 194 58.2
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 4.9e-46 188.3 160 69.4
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 4.9e-46 188.3 194 59.8
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 4.9e-46 188.3 195 59.5
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 8.3e-46 187.6 194 59.3
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 1.4e-45 186.8 199 57.8
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 1.9e-45 186.4 200 57.5
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 2.4e-45 186.0 195 56.9
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 3.2e-45 185.7 199 57.3
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 4.1e-45 185.3 200 58.5
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 7.0e-45 184.5 197 56.3
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 9.2e-45 184.1 200 58.0
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.2e-44 183.7 188 60.1
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.0e-44 183.0 197 55.8
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 3.5e-44 182.2 191 55.5
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 4.6e-44 181.8 193 56.5
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 6.0e-44 181.4 192 58.3
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 6.0e-44 181.4 194 55.2
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 1.7e-43 179.9 194 56.2
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 2.3e-43 179.5 194 57.2
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 3.0e-43 179.1 198 55.6
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 5.0e-43 178.3 193 56.5
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 1.1e-42 177.2 191 55.0
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.5e-42 176.8 191 56.5
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 3.3e-42 175.6 97 96.9
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 3.3e-42 175.6 191 56.5
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 9.5e-42 174.1 170 61.2
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 9.5e-42 174.1 193 53.9
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 1.6e-41 173.3 208 52.9
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 2.1e-41 172.9 192 55.2
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 2.1e-41 172.9 195 54.9
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 4.7e-41 171.8 196 55.1
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 4.7e-41 171.8 139 68.3
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 8.1e-41 171.0 193 54.9
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 1.4e-40 170.2 228 50.9
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 3.1e-40 169.1 192 54.7
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 3.1e-40 169.1 191 54.5
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 6.8e-40 167.9 203 52.2
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 8.9e-40 167.5 198 51.5
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 1.5e-39 166.8 192 54.7
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 2.0e-39 166.4 161 64.6
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 3.4e-39 165.6 201 52.7
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 4.4e-39 165.2 193 54.4
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 4.4e-39 165.2 139 64.7
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 1.7e-38 163.3 191 55.0
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 1.7e-38 163.3 150 60.7
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 2.9e-38 162.5 193 51.8
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 8.3e-38 161.0 160 63.8
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 8.3e-38 161.0 157 63.1
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 1.4e-37 160.2 159 63.5
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 2.4e-37 159.5 204 52.0
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.2e-37 159.1 191 51.8
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 7.1e-37 157.9 108 81.5
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 7.1e-37 157.9 195 52.8
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 7.1e-37 157.9 199 52.3
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 2.1e-36 156.4 190 51.1
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 2.7e-36 156.0 160 55.6
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 4.6e-36 155.2 171 52.0
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 1.7e-35 153.3 149 59.7
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 5.1e-35 151.8 213 45.1
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 6.6e-35 151.4 174 55.2
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.9e-34 149.8 194 50.0
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 4.3e-34 148.7 187 51.9
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 1.6e-33 146.7 174 50.6
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 1.1e-32 144.1 109 67.9
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 1.1e-32 144.1 174 50.0
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 1.4e-32 143.7 193 48.7
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 1.4e-32 143.7 193 48.7
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 2.4e-32 142.9 195 49.7
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 3.1e-32 142.5 193 48.7
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 6.8e-32 141.4 173 51.4
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 6.8e-32 141.4 196 48.0
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.2e-31 140.6 166 54.2
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.2e-31 140.6 165 53.9
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.0e-31 139.8 165 53.3
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 1.3e-30 137.1 143 53.1
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 2.2e-30 136.3 95 72.6
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 2.9e-30 136.0 205 45.9
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 2.9e-30 136.0 194 47.9
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.9e-30 136.0 194 47.9
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 1.1e-29 134.0 192 47.9
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 1.4e-29 133.7 187 48.1
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 1.4e-29 133.7 172 48.8
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 1.4e-29 133.7 131 57.3
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 2.7e-28 129.4 159 51.6
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 4.6e-28 128.6 146 53.4
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.6e-28 128.6 200 45.5
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.0e-27 127.5 206 44.2
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 1.3e-27 127.1 175 45.1
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 1.7e-27 126.7 197 46.7
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 1.7e-27 126.7 201 46.3
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 3.0e-27 125.9 142 54.9
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 3.0e-27 125.9 189 46.6
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 3.0e-27 125.9 198 44.4
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 8.7e-27 124.4 185 45.9
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.1e-26 124.0 278 36.7
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 1.5e-26 123.6 173 49.1
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 1.9e-26 123.2 198 44.4
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 1.9e-26 123.2 198 44.4
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 1.9e-26 123.2 241 41.9
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 5.6e-26 121.7 130 55.4
vmacro14308 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.6e-25 120.2 182 43.4
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 2.8e-25 119.4 164 48.8
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 1.1e-24 117.5 106 60.4
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 1.1e-24 117.5 193 42.5
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 6.9e-24 114.8 135 49.6
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 8.4e-22 107.8 150 42.7
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 2.4e-21 106.3 182 45.6
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 2.7e-20 102.8 76 67.1
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 6.0e-20 101.7 195 41.0
Sed0022805 Sechium edule HOM05D004133 ORTHO05D004683 1.7e-19 100.1 79 65.8
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 2.3e-19 99.8 147 44.9
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 3.9e-19 99.0 153 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 1.9e-18 96.7 198 37.9
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 4.3e-18 95.5 195 39.5
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 2.8e-17 92.8 95 60.0
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 6.2e-17 91.7 90 60.0
Nitab4.5_0002426g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.0e-15 86.7 153 45.8
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 2.6e-15 86.3 74 64.9
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 1.2e-12 77.4 141 41.8
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 1.6e-12 77.0 69 72.5
BcaB04g17122 Brassica carinata HOM05D004133 ORTHO05D004683 1.5e-10 70.5 68 63.2
Nitab4.5_0001357g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 2.1e-09 66.6 71 47.9
RcHm_v2.0_Chr1g0344771 Rosa chinensis HOM05D004133 ORTHO05D004683 2.1e-09 66.6 66 56.1
Nitab4.5_0011455g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 8.1e-09 64.7 71 46.5
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 6.4e-06 55.1 103 43.7


User provided reference genes

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