Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13851 Brassica carinata HOM05D004133 ORTHO05D004683 2.7e-173 612.1 342 100.0
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 3.6e-130 468.8 369 76.2
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 2.4e-129 466.1 372 77.2
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 2.4e-129 466.1 373 75.9
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 7.6e-128 461.1 365 77.0
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 1.7e-127 459.9 372 75.0
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 6.4e-127 458.0 361 77.0
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 8.7e-124 447.6 363 75.5
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 1.1e-123 447.2 363 75.2
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 1.1e-123 447.2 363 75.2
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 3.6e-122 442.2 365 76.2
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 3.1e-121 439.1 363 74.4
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 6.9e-121 438.0 371 74.1
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 3.4e-120 435.6 371 74.1
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 3.4e-120 435.6 371 74.4
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 4.5e-120 435.3 376 73.9
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 4.5e-120 435.3 371 73.9
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 2.2e-119 433.0 360 74.2
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 6.0e-109 398.3 379 65.4
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 1.9e-107 393.3 368 69.8
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 1.5e-91 340.5 378 58.2
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 3.3e-91 339.3 375 57.1
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 3.3e-91 339.3 375 57.1
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 1.3e-90 337.4 269 69.5
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.8e-90 336.3 366 58.5
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 8.2e-90 334.7 375 57.9
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.4e-89 334.0 367 58.6
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 6.9e-89 331.6 366 57.1
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 2.0e-88 330.1 384 55.5
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 3.4e-88 329.3 382 57.1
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 7.7e-88 328.2 379 55.9
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 2.2e-87 326.6 369 58.3
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 2.9e-87 326.2 364 58.8
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 3.8e-87 325.9 378 56.9
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 5.0e-87 325.5 382 56.8
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 1.9e-86 323.6 376 55.3
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 1.6e-85 320.5 376 55.9
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 2.7e-85 319.7 372 56.5
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 6.1e-85 318.5 381 54.9
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 3.0e-84 316.2 384 53.4
TAR633G2810 Trochodendron aralioides HOM05D004133 ORTHO05D004683 3.0e-84 316.2 387 55.0
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 3.9e-84 315.8 373 55.2
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 5.1e-84 315.5 382 52.6
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.1e-83 314.3 371 55.5
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 1.5e-83 313.9 382 55.0
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 3.3e-83 312.8 358 56.7
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 1.3e-82 310.8 365 55.6
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 3.7e-82 309.3 379 54.4
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 1.1e-81 307.8 371 53.1
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 1.4e-81 307.4 383 54.6
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 2.4e-81 306.6 382 54.2
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 4.1e-81 305.8 374 52.9
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 1.2e-80 304.3 384 53.6
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 2.0e-80 303.5 397 53.4
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 4.5e-80 302.4 366 53.8
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 5.9e-80 302.0 381 53.5
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 1.3e-79 300.8 382 52.6
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 2.9e-79 299.7 364 54.1
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 2.9e-79 299.7 382 53.9
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 5.0e-79 298.9 377 52.0
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 6.5e-79 298.5 377 52.3
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 8.5e-79 298.1 434 48.4
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 1.1e-78 297.7 364 54.4
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 1.4e-78 297.4 380 52.1
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 1.9e-78 297.0 381 52.2
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.2e-77 294.3 347 54.8
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 1.2e-77 294.3 366 52.2
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.6e-77 293.9 363 54.3
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 1.6e-77 293.9 377 53.1
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 3.6e-77 292.7 363 54.0
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 4.7e-77 292.4 348 53.4
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 6.1e-77 292.0 357 54.3
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 6.1e-77 292.0 365 51.5
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 8.0e-77 291.6 375 51.5
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.0e-76 291.2 363 53.7
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 1.0e-76 291.2 365 53.2
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 1.8e-76 290.4 373 53.1
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 2.3e-76 290.0 363 53.7
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 5.2e-76 288.9 386 50.0
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 1.1e-75 287.7 374 51.3
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 1.5e-75 287.3 376 50.8
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 2.0e-75 287.0 352 54.0
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 5.7e-75 285.4 377 52.0
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 7.4e-75 285.0 378 51.3
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 7.4e-75 285.0 383 51.4
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 7.4e-75 285.0 372 52.4
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 4.8e-74 282.3 295 56.6
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 8.2e-74 281.6 377 51.2
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 8.2e-74 281.6 367 52.6
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 1.1e-73 281.2 417 47.0
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.1e-73 279.6 377 51.5
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 1.2e-72 277.7 370 53.8
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 2.0e-72 276.9 370 46.5
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 3.5e-72 276.2 349 53.0
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 1.0e-71 274.6 355 49.6
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 1.0e-71 274.6 354 53.7
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 2.9e-71 273.1 363 51.5
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 3.8e-71 272.7 378 50.3
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 6.5e-71 271.9 353 50.4
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 8.5e-71 271.6 349 52.7
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.5e-70 270.8 362 50.0
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.5e-70 270.8 345 53.3
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 4.2e-70 269.2 377 49.1
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 4.2e-70 269.2 349 51.9
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 3.6e-69 266.2 377 49.3
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 1.8e-68 263.8 373 49.3
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 3.0e-68 263.1 382 45.8
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 3.7e-66 256.1 371 48.0
BraA02t05632Z Brassica rapa HOM05D004133 ORTHO05D004683 1.4e-65 254.2 197 74.1
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 3.1e-65 253.1 365 49.9
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 2.7e-64 250.0 294 51.7
BNapus_Darmor_BZH_scaffold_38p00930 Brassica napus HOM05D004133 ORTHO05D004683 1.0e-63 248.1 197 72.6
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 1.0e-63 248.1 392 46.9
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 2.5e-62 243.4 371 48.8
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 2.1e-61 240.4 328 46.3
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 4.0e-60 236.1 373 46.1
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 7.5e-59 231.9 305 47.5
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.5e-56 223.0 556 36.2
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 3.3e-54 216.5 288 47.6
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 3.3e-54 216.5 291 44.7
Actinidia06347 Actinidia chinensis HOM05D004133 ORTHO05D004683 2.8e-53 213.4 241 51.0
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 4.4e-51 206.1 335 42.7
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 5.7e-51 205.7 311 49.8
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 8.3e-50 201.8 355 43.1
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 1.7e-47 194.1 385 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 2.3e-44 183.7 387 36.2
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.7e-42 176.4 314 40.1
Ah.08g222320 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.4e-41 174.5 212 47.6
SEGI_40011 Sequoiadendron giganteum HOM05D004133 ORTHO05D004683 1.9e-41 174.1 252 50.4
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 2.4e-41 173.7 391 39.9
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 1.6e-40 171.0 215 46.5
RcHm_v2.0_Chr1g0344781 Rosa chinensis HOM05D004133 ORTHO05D004683 6.0e-40 169.1 145 62.1
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 1.2e-37 161.4 372 36.3
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 5.8e-35 152.5 280 39.3
Nitab4.5_0006895g0020 Nicotiana tabacum HOM05D004133 ORTHO05D004683 9.8e-35 151.8 159 55.3
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 2.9e-34 150.2 345 32.2
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 8.3e-34 148.7 172 58.7
BcaB04g17121 Brassica carinata HOM05D004133 ORTHO05D004683 1.6e-32 144.4 81 92.6
BolC2t07129H Brassica oleracea HOM05D004133 ORTHO05D004683 2.8e-29 133.7 127 77.2
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 7.1e-25 119.0 209 39.2
Sed0001128 Sechium edule HOM05D004133 ORTHO05D004683 4.6e-24 116.3 158 45.6
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 1.7e-23 114.4 383 28.2
Peaxi162Scf00259g00025 Petunia axillaris HOM05D004133 ORTHO05D004683 2.3e-23 114.0 160 45.0
C05p31570 Brassica napus HOM05D004133 ORTHO05D004683 1.2e-21 108.2 76 78.9
BolC5t31880H Brassica oleracea HOM05D004133 ORTHO05D004683 4.7e-21 106.3 75 78.7
BcaC04g19526 Brassica carinata HOM05D004133 ORTHO05D004683 3.2e-17 93.6 101 76.2
Cre02.g092550 Chlamydomonas reinhardtii HOM05D004133 ORTHO05D004683 7.1e-17 92.4 155 36.8
MCO02G231 Micromonas commoda HOM05D004133 ORTHO05D004683 1.7e-15 87.8 222 29.3
Rhsim13G0198800 Rhododendron simsii HOM05D004133 ORTHO05D004683 6.6e-15 85.9 109 64.2
Hma1.2p1_1811F.1_g303600 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 1.1e-14 85.1 97 54.6
Peaxi162Scf00259g00213 Petunia axillaris HOM05D004133 ORTHO05D004683 2.1e-13 80.9 113 42.5
Nitab4.5_0006895g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.4e-12 78.2 107 45.8
SHI25280 Sapria himalayana HOM05D004133 ORTHO05D004683 4.4e-11 73.2 65 52.3
PRCOL_00003816 Prasinoderma coloniale HOM05D004133 ORTHO05D004683 1.9e-09 67.8 248 27.0
BcaC06g30780 Brassica carinata HOM05D000371 ORTHO05D001484 3.9e-07 60.1 124 30.6
BolC7t44446H Brassica oleracea HOM05D000371 ORTHO05D001484 6.6e-07 59.3 124 31.5
BraA06t26822Z Brassica rapa HOM05D000371 ORTHO05D001484 6.6e-07 59.3 124 30.6
A06p39080 Brassica napus HOM05D000371 ORTHO05D001484 8.7e-07 58.9 124 30.6
C07p39260 Brassica napus HOM05D000371 ORTHO05D001484 1.1e-06 58.5 124 30.6
BcaC06g30781 Brassica carinata HOM05D000371 ORTHO05D001484 1.5e-06 58.2 124 30.6
Sp2g18930 Schrenkiella parvula HOM05D000371 ORTHO05D001484 1.5e-06 58.2 124 30.6
SEGI_24644 Sequoiadendron giganteum HOM05D005145 ORTHO05D006062 1.9e-06 57.8 141 29.1
CAN.G874.19 Capsicum annuum HOM05D000371 ORTHO05D001484 7.3e-06 55.8 124 29.8
Nitab4.5_0000497g0050 Nicotiana tabacum HOM05D000371 ORTHO05D001484 7.3e-06 55.8 157 28.7
Psat4g204920 Pisum sativum HOM05D000371 ORTHO05D001484 7.3e-06 55.8 141 29.8
Cre02.g075100 Chlamydomonas reinhardtii HOM05D003946 ORTHO05D004485 9.6e-06 55.5 139 32.4
Oeu019878.2 Olea europaea HOM05D000371 ORTHO05D001484 9.6e-06 55.5 168 30.4


User provided reference genes

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