Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 6.3e-130 467.6 265 100.0
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 1.4e-129 466.5 244 100.0
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 7.4e-123 444.1 247 94.3
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 7.4e-123 444.1 247 94.3
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 3.8e-103 378.6 246 87.4
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 4.3e-86 322.0 248 74.6
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 2.8e-85 319.3 247 69.2
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-82 310.5 253 73.9
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 2.9e-82 309.3 253 73.5
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.9e-82 309.3 253 73.5
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 5.4e-81 305.1 251 73.3
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 2.7e-80 302.8 251 72.9
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 3.5e-80 302.4 247 71.7
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 4.6e-80 302.0 257 74.7
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.1e-78 297.4 252 72.2
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.5e-78 297.0 253 71.9
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.5e-78 297.0 253 71.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 3.2e-73 279.3 255 69.0
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.8e-68 263.5 264 67.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.2e-67 260.8 251 67.3
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 2.2e-66 256.5 235 67.7
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 4.0e-60 235.7 260 62.3
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.1e-57 227.6 250 55.2
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 3.7e-37 159.5 235 47.2
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 4.9e-34 149.1 298 45.6
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 5.5e-33 145.6 281 41.3
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.8e-31 140.6 333 36.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.9e-31 139.4 347 34.6
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 1.6e-29 134.0 332 35.2
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.1e-29 133.7 349 36.1
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.2e-29 132.1 350 35.4
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 6.2e-29 132.1 350 34.9
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.4e-28 130.2 350 35.1
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 6.9e-28 128.6 333 36.0
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 1.5e-27 127.5 339 36.0
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.5e-27 125.9 343 33.2
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 1.0e-26 124.8 340 34.4
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 1.0e-26 124.8 354 32.8
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.7e-26 124.0 338 32.8
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.2e-26 123.6 345 35.1
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.9e-26 123.2 307 36.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.5e-26 122.1 307 35.8
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.4e-25 120.9 351 34.2
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.5e-25 120.2 317 35.6
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 3.2e-25 119.8 339 33.9
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 4.2e-25 119.4 338 32.8
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 5.5e-25 119.0 275 38.9
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 7.9e-24 115.2 347 36.6
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.0e-23 114.8 280 36.4
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.3e-23 114.4 350 32.3
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 1.3e-23 114.4 347 32.3
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.8e-23 114.0 330 33.3
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 5.1e-23 112.5 337 33.5
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.1e-22 111.3 317 34.7
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.5e-22 110.9 343 32.4
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 4.3e-22 109.4 250 37.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 5.7e-22 109.0 324 32.4
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 7.4e-22 108.6 295 35.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 9.7e-22 108.2 361 34.6
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 9.7e-22 108.2 298 33.2
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.6e-21 107.5 318 36.8
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 3.7e-21 106.3 324 32.4
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 8.2e-21 105.1 269 39.0
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 1.4e-20 104.4 352 31.0
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.8e-20 104.0 288 34.0
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 3.1e-20 103.2 271 38.7
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.2e-19 101.3 333 35.7
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.2e-19 101.3 351 31.3
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.5e-19 100.9 309 32.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.0e-18 98.2 315 35.6
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.0e-18 98.2 339 29.5
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.0e-18 98.2 336 30.1
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.7e-18 97.4 292 33.2
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.9e-18 96.7 296 32.1
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 5.0e-18 95.9 337 30.3
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.1e-17 94.7 357 31.1
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 1.1e-17 94.7 273 37.7
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.4e-17 94.4 345 30.4
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.4e-17 94.4 363 28.1
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.4e-17 94.4 331 30.2
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.9e-17 94.0 329 35.0
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 3.2e-17 93.2 269 36.1
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.2e-16 91.3 361 28.0
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.2e-16 91.3 349 28.9
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.2e-16 91.3 349 30.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.6e-16 90.9 349 28.9
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.6e-16 89.7 329 34.3
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 4.6e-16 89.4 317 34.4
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.6e-16 89.4 309 36.6
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 7.9e-16 88.6 234 33.8
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.4e-15 87.8 317 32.8
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.8e-15 87.4 47 93.6
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.0e-15 86.7 321 33.0
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 3.0e-15 86.7 285 32.3
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.1e-15 85.9 275 37.1
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 8.8e-15 85.1 266 32.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 8.8e-15 85.1 244 31.6
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 2.0e-14 84.0 239 33.9
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 2.5e-14 83.6 109 50.5
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 2.5e-14 83.6 160 41.2
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 7.4e-14 82.0 298 37.6
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 2.2e-13 80.5 336 33.6
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 2.2e-13 80.5 47 89.4
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.8e-13 79.3 243 34.6
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 8.2e-13 78.6 55 78.2
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.1e-12 78.2 44 90.9
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.1e-12 78.2 44 90.9
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.4e-12 77.0 43 90.7
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.4e-12 77.0 44 88.6
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 6.9e-12 75.5 45 86.7
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.6e-11 73.6 42 88.1
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.5e-11 72.8 307 27.7
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 5.9e-11 72.4 40 95.0
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 7.7e-11 72.0 56 76.8
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 7.7e-11 72.0 215 33.0
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.0e-10 71.6 43 86.0
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 1.3e-10 71.2 233 31.3
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.7e-10 70.9 272 31.2
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 6.5e-10 68.9 154 39.6
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 8.5e-10 68.6 126 44.4
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.9e-09 67.4 233 33.0
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.5e-09 67.0 134 41.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 2.5e-09 67.0 235 33.6
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 3.2e-09 66.6 175 36.6
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 3.2e-09 66.6 224 28.6
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.2e-09 66.2 130 39.2
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 7.2e-09 65.5 289 29.4
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 1.2e-08 64.7 60 68.3
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.1e-08 63.9 289 30.4
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.1e-08 63.9 256 30.9
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 7.9e-08 62.0 94 45.7
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.0e-07 61.6 180 31.1
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.0e-07 60.1 130 40.8
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.7e-06 55.8 73 50.7
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 9.7e-06 55.1 98 36.7


User provided reference genes

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