Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 3.8e-120 434.9 226 100.0
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.1e-119 433.3 226 99.6
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 7.2e-119 430.6 226 98.7
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 7.2e-119 430.6 226 98.7
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 7.2e-119 430.6 226 98.7
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 6.1e-118 427.6 227 98.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.8e-117 426.0 226 97.8
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.0e-117 424.9 226 98.2
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.0e-116 422.5 226 96.9
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 2.0e-116 422.5 226 97.3
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.2e-115 419.1 227 96.0
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 8.3e-115 417.2 226 96.5
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.5
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.5
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-114 416.4 227 95.6
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.2e-114 415.2 227 94.7
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.2e-114 415.2 227 94.7
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 5.0e-112 407.9 226 94.7
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 6.4e-107 391.0 229 89.1
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 7.0e-106 387.5 227 89.9
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.0e-106 387.5 226 88.9
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.0e-106 387.5 228 88.6
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 1.7e-104 382.9 226 88.5
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.0e-104 382.1 229 88.2
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 5.0e-104 381.3 230 87.4
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 5.0e-104 381.3 230 87.4
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.0e-104 381.3 229 87.8
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.0e-104 381.3 227 88.1
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.6e-104 380.9 230 87.4
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 8.6e-104 380.6 226 88.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 8.6e-104 380.6 227 87.7
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 8.6e-104 380.6 227 88.1
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.4
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.4
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.5e-103 379.8 209 93.3
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.9e-103 379.4 232 85.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.5e-103 379.0 226 88.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.3e-103 378.6 225 88.9
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 3.3e-103 378.6 216 90.3
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.3e-103 378.3 227 87.7
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 7.3e-103 377.5 212 92.5
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 9.5e-103 377.1 229 85.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.2e-102 376.7 231 85.3
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.1e-102 375.9 234 84.6
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 227 86.8
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.1e-102 375.9 224 87.9
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 228 86.0
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 2.8e-102 375.6 230 86.1
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 3.6e-102 375.2 230 86.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 4.7e-102 374.8 230 86.5
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 4.7e-102 374.8 232 85.3
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.5
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.5
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 8.1e-102 374.0 225 86.7
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 8.1e-102 374.0 227 85.5
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 8.1e-102 374.0 224 87.5
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 231 84.4
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.4e-101 373.2 231 85.7
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 85.3
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 1.8e-101 372.9 224 88.4
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.8e-101 372.9 227 86.3
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.3e-101 372.5 231 84.4
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.3e-101 372.5 227 84.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.3e-101 372.5 232 85.3
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.1e-101 372.1 210 91.0
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 4.0e-101 371.7 229 86.0
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 5.2e-101 371.3 208 92.3
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 5.2e-101 371.3 227 86.8
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 5.2e-101 371.3 226 87.6
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 8.9e-101 370.5 227 85.5
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.2e-100 370.2 223 87.0
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.5e-100 369.8 210 91.0
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 1.5e-100 369.8 233 85.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.5e-100 369.8 223 87.0
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.5e-100 369.8 225 85.3
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.5e-100 369.8 210 90.5
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.0e-100 369.4 209 92.8
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 224 86.6
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 231 85.7
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.6e-100 369.0 212 89.6
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 3.4e-100 368.6 208 91.3
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 3.4e-100 368.6 230 84.8
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 3.4e-100 368.6 225 86.2
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.4e-100 368.6 208 91.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.4e-100 368.2 222 85.6
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 5.8e-100 367.9 210 89.5
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.8e-100 367.1 256 78.5
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.7e-99 366.3 228 85.5
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.7e-99 366.3 231 83.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.9e-99 365.5 204 94.1
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.9e-99 365.5 227 84.6
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 4.9e-99 364.8 206 91.7
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 6.4e-99 364.4 206 91.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 8.3e-99 364.0 225 84.4
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.1e-98 363.6 231 84.0
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 82.5
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 5.4e-98 361.3 231 82.7
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.4e-98 361.3 209 90.0
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 7.1e-98 360.9 232 83.2
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 9.2e-98 360.5 208 90.4
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 2.1e-97 359.4 231 83.1
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 4.6e-97 358.2 231 81.8
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 6.0e-97 357.8 213 86.4
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 7.8e-97 357.5 207 90.3
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.0e-96 357.1 224 81.2
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.3e-96 356.7 224 83.5
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.3e-96 355.9 203 90.6
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 8.6e-96 354.0 224 80.8
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.5e-95 353.2 226 82.3
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.1e-93 345.5 228 80.7
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.2e-92 343.6 214 82.2
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.9e-90 336.3 300 64.0
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.6e-89 333.2 233 77.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.9e-88 328.6 192 89.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 8.6e-88 327.4 208 81.2
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 5.8e-84 314.7 203 78.3
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 3.2e-82 308.9 211 75.8
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 4.3e-79 298.5 211 74.4
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.6e-76 289.3 190 82.1
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.4e-74 282.7 194 80.4
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.2e-74 282.3 162 90.7
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.2e-74 282.0 179 85.5
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.2e-74 282.0 174 81.6
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.6e-73 280.0 157 94.3
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 2.7e-73 279.3 157 92.4
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 6.0e-73 278.1 157 93.0
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.1e-69 267.3 170 83.5
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-69 266.9 186 76.9
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.4e-69 266.9 166 86.1
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.4e-68 262.3 180 76.1
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.3e-67 260.4 161 87.0
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.4e-60 235.7 160 77.5
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.1e-53 212.6 124 88.7
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 4.5e-52 208.8 175 68.6
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.0e-43 181.0 109 89.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.2e-42 176.0 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.5e-39 167.2 97 89.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.5e-35 151.8 157 56.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.7e-33 145.6 87 88.5
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.4e-29 134.0 79 83.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 2.7e-25 119.8 206 38.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 4.0e-24 115.9 78 78.2
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.2e-22 110.2 57 93.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-17 92.4 66 69.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.3e-16 90.1 63 74.6
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.9e-10 70.5 46 76.1


User provided reference genes

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