Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 5.3e-237 823.9 405 100.0
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 5.8e-228 793.9 405 96.5
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 5.8e-228 793.9 405 96.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 8.7e-224 780.0 405 95.3
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.8e-221 772.3 407 93.6
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.0e-211 740.0 407 89.4
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.5e-210 735.3 406 88.7
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 5.1e-208 727.6 406 86.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.1e-205 719.9 405 86.7
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.5e-204 716.1 404 86.4
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.2e-203 712.2 405 85.7
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.1e-201 705.7 405 84.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.1e-201 705.7 391 87.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 8.8e-200 700.3 391 87.0
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.0e-199 699.1 407 84.8
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-196 689.9 395 86.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.2e-196 689.9 395 86.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 4.5e-188 661.4 405 80.2
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 7.0e-181 637.5 390 80.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.2e-172 610.1 408 74.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.8e-172 607.4 408 74.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.0e-171 607.1 409 73.1
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.7e-171 606.3 408 73.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.9e-171 605.5 409 74.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.6e-171 604.0 412 73.8
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.1e-170 603.6 405 73.3
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 2.5e-170 602.4 386 74.9
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 5.6e-170 601.3 407 73.2
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-169 600.1 408 72.5
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.7e-169 598.2 408 73.0
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 6.1e-169 597.8 407 72.5
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.4e-168 596.7 415 72.3
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.4e-168 596.7 408 73.8
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 3.0e-168 595.5 407 73.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.8e-168 594.3 415 72.3
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.5e-167 593.2 419 69.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-167 592.4 415 72.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 5.7e-167 591.3 407 72.2
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.3e-166 590.1 408 71.6
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.2e-166 589.3 408 71.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 4.9e-166 588.2 407 72.0
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 6.4e-166 587.8 409 71.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.1e-165 587.0 411 70.6
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.4e-165 585.9 407 72.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.4e-165 584.7 405 72.1
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.2e-164 583.6 407 71.0
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 1.6e-164 583.2 407 70.3
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.0e-164 582.8 406 69.5
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.5e-164 582.0 408 71.8
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 5.9e-164 581.3 408 70.6
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 7.8e-164 580.9 409 70.2
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 7.8e-164 580.9 387 73.6
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 7.8e-164 580.9 407 69.5
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.0e-163 578.2 388 72.2
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 6.6e-163 577.8 407 69.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.3e-162 575.5 417 71.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 9.5e-162 573.9 409 68.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.2e-161 573.5 392 71.7
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.1e-161 572.8 409 70.7
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.6e-161 572.0 392 74.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.1e-160 570.5 409 68.2
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.4e-160 570.1 407 70.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.4e-160 570.1 409 68.7
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 4.0e-160 568.5 408 69.1
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 5.2e-160 568.2 410 69.8
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 5.2e-160 568.2 390 72.1
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 8.9e-160 567.4 402 69.7
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.4e-159 565.5 389 72.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 4.4e-159 565.1 409 70.7
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 5.8e-159 564.7 406 70.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.7e-158 563.1 408 69.1
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.2e-158 562.8 404 68.1
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.7e-158 562.0 406 69.5
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 4.9e-158 561.6 407 69.8
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 6.4e-158 561.2 390 70.5
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.4e-157 559.3 385 71.4
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.1e-157 558.5 385 70.9
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 5.4e-157 558.1 384 72.9
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.4e-157 558.1 407 69.3
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.2e-156 557.0 406 69.2
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.6e-156 556.6 390 70.0
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.0e-156 556.2 397 69.0
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.5e-156 555.4 414 69.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 6.0e-156 554.7 409 69.2
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 3.0e-155 552.4 410 69.3
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 3.9e-155 552.0 408 67.4
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 8.6e-155 550.8 404 68.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.5e-154 549.3 394 70.3
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.2e-153 547.0 397 67.8
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.6e-153 546.6 408 66.9
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.8e-153 545.8 410 68.5
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.6e-153 545.4 362 72.9
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.0e-152 542.0 409 67.2
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 2.6e-151 539.3 391 68.8
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.4e-151 538.9 403 66.5
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.7e-150 535.4 413 67.6
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.4e-149 533.5 392 66.1
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.6e-148 528.5 389 67.9
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 7.8e-148 527.7 418 65.1
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.3e-147 526.9 360 72.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-146 523.5 459 62.5
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 9.5e-146 520.8 390 65.9
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 4.7e-145 518.5 384 64.6
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.1e-144 517.3 393 64.9
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 8.9e-144 514.2 410 63.9
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.5e-143 513.5 409 64.3
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 3.8e-142 508.8 396 62.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 8.4e-142 507.7 390 63.3
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.3e-139 500.4 384 63.0
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.7e-139 500.0 386 63.5
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 5.1e-139 498.4 384 63.5
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-138 497.3 392 63.5
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.9e-138 496.5 384 63.8
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.3e-138 495.4 394 61.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.2e-137 493.8 388 62.4
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.1e-137 493.0 385 63.1
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.1e-136 490.7 391 62.7
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.8e-136 490.0 387 64.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.4e-136 489.6 310 76.5
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.5e-135 486.9 408 62.0
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.5e-135 486.9 413 62.2
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 7.6e-135 484.6 384 64.3
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.9e-135 484.2 398 62.1
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 3.9e-131 472.2 330 67.9
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.5e-130 470.3 310 73.9
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.5e-130 470.3 424 59.0
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.4e-127 459.1 384 61.2
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.3e-122 442.6 264 81.8
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.8e-118 429.1 392 55.9
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.5e-109 399.8 250 76.4
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.5e-109 399.8 246 77.2
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.5e-108 396.0 202 95.5
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.3e-104 382.1 282 69.1
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.5e-103 380.6 279 69.5
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.5e-98 364.0 413 49.2
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 2.6e-95 353.2 281 62.6
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.3e-91 340.1 388 46.9
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.4e-88 330.9 250 64.0
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.4e-88 330.9 272 58.1
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.4e-88 330.1 410 46.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 5.9e-87 325.5 234 67.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.2e-77 292.7 172 82.0
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.5e-74 284.3 197 73.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.5e-63 246.1 281 46.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.0e-62 245.0 176 67.6
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.6e-47 194.5 166 60.2
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.2e-43 179.5 234 42.3
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.8e-43 179.1 164 55.5
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-40 170.2 168 54.8
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.6e-39 167.9 119 69.7
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-37 161.0 164 52.4
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 5.2e-35 152.9 82 85.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 7.5e-34 149.1 156 51.3
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.9e-30 136.7 305 31.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-29 134.4 299 32.4
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.7e-28 129.8 251 36.3
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.4e-27 128.3 236 36.9
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.6e-26 124.0 76 75.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 4.2e-24 116.7 378 29.4
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.5e-23 113.6 68 76.5
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 7.8e-23 112.5 159 42.1
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.0e-22 112.1 68 75.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-22 111.3 68 75.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 3.6e-20 103.6 186 37.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.0e-18 97.8 141 37.6
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 3.4e-18 97.1 48 100.0
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-16 92.0 146 38.4
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 6.6e-14 82.8 183 32.2
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 6.9e-11 72.8 113 39.8
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 9.0e-11 72.4 67 47.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.9e-10 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 7.1e-08 62.8 119 38.7
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 3.9e-06 57.0 181 29.8


User provided reference genes

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