Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 1.0e-73 280.0 147 100.0
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 1.0e-73 280.0 147 100.0
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 1.0e-73 280.0 147 100.0
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 4.1e-62 241.5 146 89.0
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 8.5e-60 233.8 145 86.9
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 5.5e-59 231.1 146 87.7
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 8.2e-55 217.2 149 81.9
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 9.1e-54 213.8 151 80.8
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 1.2e-53 213.4 153 79.7
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 2.6e-53 212.2 153 79.1
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 2.6e-53 212.2 153 79.1
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 1.7e-52 209.5 153 78.4
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 1.7e-52 209.5 153 78.4
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 1.2e-50 203.4 150 76.7
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 1.8e-49 199.5 151 76.8
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 3.0e-49 198.7 150 74.7
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 3.0e-49 198.7 150 74.7
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.4e-46 189.9 150 74.7
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 9.1e-46 187.2 155 70.3
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 2.5e-43 179.1 154 68.8
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 3.2e-43 178.7 155 72.3
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 1.6e-42 176.4 155 68.4
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 1.1e-38 163.7 155 66.5
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 2.7e-29 132.5 156 59.0
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 7.7e-29 131.0 161 58.4
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 2.2e-28 129.4 159 54.7
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 1.1e-27 127.1 162 57.4
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 1.9e-27 126.3 163 54.6
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 3.2e-27 125.6 159 55.3
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 3.2e-27 125.6 159 55.3
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 3.2e-27 125.6 163 51.5
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 4.2e-27 125.2 161 56.5
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 4.7e-26 121.7 161 52.2
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 6.1e-26 121.3 160 54.4
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 1.8e-25 119.8 161 51.6
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 1.7e-23 113.2 154 51.3
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.1e-22 110.5 160 50.6
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 4.1e-22 108.6 161 49.1
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 4.1e-22 108.6 160 50.6
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 7.7e-21 104.4 160 51.2
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 7.7e-21 104.4 160 51.2
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.9e-19 99.8 164 48.8
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 2.3e-17 92.8 163 44.8
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 8.9e-17 90.9 155 45.2
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 8.9e-17 90.9 163 44.8
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 8.9e-17 90.9 163 44.8
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 2.0e-16 89.7 149 47.7
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 2.4e-14 82.8 121 47.1
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 4.1e-14 82.0 97 53.6
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 2.0e-13 79.7 123 47.2
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 3.5e-13 79.0 104 50.0
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 4.5e-13 78.6 127 45.7
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 4.5e-13 78.6 104 48.1
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.0e-12 77.4 130 43.8
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 1.3e-12 77.0 134 41.8
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 2.3e-12 76.3 118 45.8
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 2.9e-12 75.9 107 44.9
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 5.0e-12 75.1 95 48.4
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 5.0e-12 75.1 107 48.6
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 5.0e-12 75.1 107 48.6
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 6.6e-12 74.7 124 43.5
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 8.6e-12 74.3 127 44.1
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 8.6e-12 74.3 104 46.2
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 8.6e-12 74.3 118 45.8
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 1.5e-11 73.6 102 44.1
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 3.3e-11 72.4 117 42.7
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 1.6e-10 70.1 106 45.3
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 2.1e-10 69.7 128 40.6
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 2.1e-10 69.7 111 43.2
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 2.1e-10 69.7 101 47.5
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 2.8e-10 69.3 128 40.6
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 2.8e-10 69.3 129 42.6
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 3.6e-10 68.9 113 41.6
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 4.7e-10 68.6 122 44.3
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 4.7e-10 68.6 113 43.4
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 4.7e-10 68.6 113 46.0
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 4.7e-10 68.6 101 47.5
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 6.1e-10 68.2 107 44.9
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 8.0e-10 67.8 122 44.3
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 8.0e-10 67.8 122 45.1
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 8.0e-10 67.8 124 41.9
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 8.0e-10 67.8 116 41.4
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 8.0e-10 67.8 116 42.2
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 8.0e-10 67.8 99 44.4
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 1.0e-09 67.4 120 40.0
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.0e-09 67.4 120 40.0
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 1.4e-09 67.0 110 42.7
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 1.8e-09 66.6 121 41.3
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 2.3e-09 66.2 100 47.0
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 3.1e-09 65.9 136 40.4
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 4.0e-09 65.5 120 39.2
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 4.0e-09 65.5 115 42.6
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 4.0e-09 65.5 124 41.9
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 5.2e-09 65.1 110 43.6
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 6.8e-09 64.7 90 43.3
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 6.8e-09 64.7 90 43.3
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 8.9e-09 64.3 120 39.2
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 8.9e-09 64.3 133 42.1
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.9e-09 64.3 118 39.8
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 8.9e-09 64.3 102 44.1
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 1.2e-08 63.9 125 40.0
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 1.2e-08 63.9 102 44.1
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 1.2e-08 63.9 90 44.4
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.2e-08 63.9 103 44.7
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.5e-08 63.5 120 40.0
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 2.0e-08 63.2 95 45.3
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 2.6e-08 62.8 116 40.5
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 2.6e-08 62.8 119 41.2
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 3.4e-08 62.4 120 37.5
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 3.4e-08 62.4 122 40.2
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 5.8e-08 61.6 107 39.3
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 7.5e-08 61.2 145 37.9
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 9.8e-08 60.8 132 37.9
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.3e-07 60.5 110 38.2
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 1.3e-07 60.5 123 39.0
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.3e-07 60.5 130 40.8
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 1.3e-07 60.5 112 39.3
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 3.7e-07 58.9 122 37.7
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 3.7e-07 58.9 114 42.1
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 3.7e-07 58.9 105 38.1
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 6.4e-07 58.2 125 39.2
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 6.4e-07 58.2 123 40.7
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 8.3e-07 57.8 116 42.2
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.1e-06 57.4 123 36.6
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 1.1e-06 57.4 126 38.9
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 1.1e-06 57.4 123 36.6
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.4e-06 57.0 95 38.9
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.9e-06 56.6 120 38.3
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.4e-06 56.2 93 37.6
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 3.2e-06 55.8 91 40.7
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 4.1e-06 55.5 107 39.3
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 9.2e-06 54.3 84 39.3


User provided reference genes

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