Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 2.3e-51 205.3 107 100.0
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.6e-47 192.6 107 94.4
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 4.7e-44 181.0 107 89.7
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 4.7e-44 181.0 109 86.2
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 8.1e-44 180.3 107 88.8
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 8.1e-44 180.3 112 86.6
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-43 179.9 111 85.6
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-43 179.5 111 84.7
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 3.1e-43 178.3 111 84.7
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 6.8e-43 177.2 109 86.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 8.9e-43 176.8 113 85.0
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 8.9e-43 176.8 113 85.0
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 8.9e-43 176.8 110 85.5
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 1.2e-42 176.4 106 85.8
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 3.4e-42 174.9 111 83.8
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 5.8e-42 174.1 113 82.3
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.3e-41 172.9 111 82.0
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 2.9e-41 171.8 111 81.1
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 1.1e-40 169.9 108 81.5
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 7.1e-40 167.2 109 79.8
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 2.1e-39 165.6 109 79.8
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 3.5e-39 164.9 107 83.2
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 3.5e-39 164.9 107 83.2
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 7.6e-34 147.1 92 83.7
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 2.4e-32 142.1 108 73.1
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 8.1e-28 127.1 113 67.3
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 1.5e-26 122.9 107 67.3
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.6e-23 112.8 107 59.8
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 1.3e-22 109.8 100 57.0
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.8e-22 109.4 98 59.2
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 8.7e-22 107.1 108 55.6
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 8.7e-22 107.1 101 57.4
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.1e-21 106.7 92 62.0
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 1.1e-21 106.7 95 58.9
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.5e-21 106.3 105 55.2
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 1.5e-21 106.3 104 60.6
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.9e-21 105.9 69 78.3
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.5e-21 105.5 112 56.2
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 5.6e-21 104.4 92 59.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 7.4e-21 104.0 95 53.7
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 9.6e-21 103.6 105 55.2
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 9.6e-21 103.6 91 60.4
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 9.6e-21 103.6 113 52.2
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 1.3e-20 103.2 95 57.9
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.3e-20 103.2 101 54.5
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 1.3e-20 103.2 89 57.3
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.6e-20 102.8 97 55.7
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 2.1e-20 102.4 118 56.8
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 6.2e-20 100.9 106 52.8
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 6.2e-20 100.9 83 66.3
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 8.1e-20 100.5 107 54.2
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 8.1e-20 100.5 96 56.2
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 8.1e-20 100.5 96 56.2
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.4e-19 99.8 112 52.7
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 2.4e-19 99.0 109 56.0
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 2.4e-19 99.0 86 58.1
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 2.4e-19 99.0 84 59.5
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 4.0e-19 98.2 65 75.4
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 4.0e-19 98.2 65 75.4
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 4.0e-19 98.2 105 50.5
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 5.3e-19 97.8 87 63.2
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 6.9e-19 97.4 88 56.8
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.2e-18 96.7 100 50.0
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.5e-18 96.3 79 60.8
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 1.5e-18 96.3 82 58.5
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.5e-18 96.3 65 73.8
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.5e-18 96.3 99 54.5
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.0e-18 95.9 75 58.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 3.4e-18 95.1 108 54.6
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.4e-18 95.1 71 63.4
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 4.5e-18 94.7 66 68.2
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 5.8e-18 94.4 91 51.6
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 5.8e-18 94.4 71 63.4
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 7.6e-18 94.0 98 58.2
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 7.6e-18 94.0 98 56.1
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 9.9e-18 93.6 48 85.4
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 9.9e-18 93.6 91 53.8
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 9.9e-18 93.6 112 48.2
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 1.7e-17 92.8 115 51.3
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.2e-17 92.4 105 50.5
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 2.2e-17 92.4 71 64.8
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 2.2e-17 92.4 71 62.0
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 2.9e-17 92.0 107 49.5
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 2.9e-17 92.0 110 50.9
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 4.9e-17 91.3 92 54.3
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 4.9e-17 91.3 65 67.7
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 4.9e-17 91.3 70 65.7
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 4.9e-17 91.3 115 50.4
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 6.4e-17 90.9 96 53.1
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 8.4e-17 90.5 67 61.2
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.4e-16 89.7 50 78.0
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.4e-16 89.7 117 47.9
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 5.5e-16 87.8 92 53.3
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 7.1e-16 87.4 114 47.4
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 9.3e-16 87.0 104 46.2
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 9.3e-16 87.0 92 54.3
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 1.6e-15 86.3 120 45.0
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 3.5e-15 85.1 83 56.6
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 3.5e-15 85.1 89 55.1
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 6.0e-15 84.3 47 76.6
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 6.0e-15 84.3 45 82.2
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.3e-14 82.4 82 57.3
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 3.0e-14 82.0 85 55.3
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 8.7e-14 80.5 90 53.3
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 1.5e-13 79.7 95 51.6
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 1.9e-13 79.3 82 57.3
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 5.3e-11 71.2 39 87.2
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.5e-10 69.7 58 62.1
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 3.4e-10 68.6 109 44.0
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 2.9e-09 65.5 61 57.4
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 6.5e-09 64.3 58 58.6
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 1.9e-08 62.8 43 65.1
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 2.1e-07 59.3 45 64.4


User provided reference genes

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