Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-214 749.6 376 100.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 4.5e-206 721.1 368 98.1
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.6e-203 711.1 368 97.3
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-200 702.6 375 95.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.6e-200 702.6 375 95.2
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 2.5e-185 652.1 375 87.2
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-176 622.5 360 87.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.1e-175 620.2 382 83.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.5e-174 615.1 384 82.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.5e-172 609.8 357 85.4
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 9.4e-172 607.1 357 85.2
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.2e-171 606.7 361 84.2
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.1e-171 605.9 357 84.6
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.1e-171 605.9 357 84.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.4e-170 603.2 369 83.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.4e-170 603.2 379 81.3
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.3e-165 586.6 379 78.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.9e-165 585.5 372 77.4
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.6e-155 552.0 332 84.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 5.5e-148 528.1 350 74.3
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.0e-146 522.3 352 72.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.5e-145 520.0 353 72.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 4.1e-143 511.9 350 70.3
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.2e-142 510.4 343 73.5
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.6e-142 510.0 348 71.3
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.0e-142 509.6 351 70.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.8e-142 507.7 348 71.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.3e-141 506.1 348 70.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.6e-141 504.6 348 70.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-140 503.8 348 71.0
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.9e-140 503.1 350 71.1
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.6e-139 500.0 345 71.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.6e-139 500.0 370 68.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.8e-138 496.5 352 70.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 4.0e-138 495.4 351 70.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 8.9e-138 494.2 340 70.9
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.2e-137 493.8 346 69.1
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.2e-137 493.8 349 68.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.5e-137 493.4 350 69.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.4e-137 492.3 338 71.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 9.8e-137 490.7 397 64.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.3e-136 490.3 350 69.1
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.7e-136 490.0 346 68.5
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.2e-136 489.6 318 74.2
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.9e-136 489.2 320 74.4
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 8.3e-136 487.6 320 74.1
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 8.3e-136 487.6 320 74.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.4e-135 486.9 355 67.6
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.2e-135 485.7 337 71.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.2e-135 485.7 346 69.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 5.4e-135 485.0 346 69.4
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.2e-135 484.2 349 68.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 2.0e-134 483.0 372 65.9
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.7e-134 482.6 361 67.0
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-134 482.6 346 69.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.7e-134 482.6 344 68.3
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 7.8e-134 481.1 344 68.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.1e-132 477.2 341 68.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.5e-132 476.9 345 67.5
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.9e-132 476.5 344 66.3
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.9e-132 476.5 346 67.1
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.6e-132 474.9 319 71.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 5.6e-132 474.9 318 71.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 5.6e-132 474.9 344 66.6
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 7.3e-132 474.6 350 67.1
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 9.5e-132 474.2 344 66.0
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.2e-131 473.8 396 61.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-131 473.8 345 67.8
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.8e-131 472.6 337 68.8
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 6.2e-131 471.5 344 65.4
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 6.2e-131 471.5 344 65.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.1e-130 470.7 344 64.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.4e-130 470.3 360 65.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.8e-130 469.9 374 63.4
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.3e-130 469.5 344 65.1
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.1e-130 469.2 328 69.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 6.8e-130 468.0 344 64.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 6.8e-130 468.0 344 64.8
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.5e-129 466.8 321 69.5
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.5e-129 466.8 344 65.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 7.5e-129 464.5 318 69.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 7.5e-129 464.5 344 64.5
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.3e-128 463.8 304 74.3
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.7e-128 463.4 355 65.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.2e-128 463.0 263 86.3
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 6.4e-128 461.5 355 65.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.1e-126 456.4 346 65.3
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.7e-125 453.4 351 62.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.0e-125 452.6 339 63.1
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.5e-124 449.5 355 62.5
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.2e-123 447.2 307 72.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.8e-123 446.0 344 63.4
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 3.6e-123 445.7 346 62.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 6.8e-122 441.4 371 63.1
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.0e-121 439.9 355 62.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.7e-120 436.8 318 65.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 8.6e-117 424.5 431 51.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 9.9e-113 411.0 343 58.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.9e-113 411.0 338 61.8
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.2e-112 409.8 308 68.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.4e-112 408.3 277 74.0
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.9e-111 406.8 331 61.3
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.1e-111 404.8 287 70.0
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.6e-110 403.7 354 59.6
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 6.6e-109 398.3 268 71.3
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 5.3e-106 388.7 308 65.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.4e-105 386.0 293 68.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.4e-105 385.6 316 60.1
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.4e-103 380.6 297 61.6
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.6e-101 371.7 562 40.9
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.8e-99 365.5 298 61.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.2e-95 352.4 320 54.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.3e-92 342.8 316 52.8
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.6e-91 340.5 398 48.0
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.3e-90 335.5 317 53.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 6.9e-90 335.1 316 54.1
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.4e-89 332.8 319 54.9
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 4.3e-84 315.8 228 69.3
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.5e-78 296.2 216 65.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.0e-77 294.7 220 60.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 9.7e-76 288.1 224 63.4
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.8e-75 286.6 267 55.8
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 4.6e-70 269.2 171 71.9
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 9.7e-68 261.5 202 66.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.7e-67 259.6 192 74.0
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 6.9e-66 255.4 206 65.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.6e-65 253.4 184 71.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 4.5e-65 252.7 239 58.2
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 3.3e-60 236.5 119 90.8
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.4e-60 236.1 243 51.0
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.0e-54 215.3 224 54.5
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.8e-42 177.6 302 38.4
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.2e-38 164.9 149 52.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 8.8e-37 158.7 307 31.6
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.5e-36 157.9 93 76.3
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 5.9e-33 146.0 293 33.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.6e-30 136.7 84 75.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 6.6e-24 115.9 98 51.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.9e-18 97.8 107 43.9
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 3.5e-17 93.6 81 67.9
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.4e-12 77.0 49 67.3
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 7.1e-10 69.3 188 27.1


User provided reference genes

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