Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.2e-145 518.5 272 100.0
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 8.1e-141 503.8 264 99.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.6e-136 489.6 264 94.7
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-130 469.9 264 93.9
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.3e-130 469.9 264 93.9
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.4e-121 439.9 279 83.2
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 5.5e-113 411.4 274 80.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 7.9e-112 407.5 314 72.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.3e-111 406.0 274 81.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.5e-110 402.5 274 81.0
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 3.3e-102 375.6 248 78.6
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 3.7e-93 345.5 234 73.1
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.7e-93 345.5 234 73.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.0e-91 339.7 276 66.7
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 3.5e-91 339.0 275 66.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.9e-91 338.2 232 72.4
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.0e-90 337.4 238 69.3
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 2.2e-90 336.3 249 69.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 2.9e-90 335.9 250 68.0
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 3.8e-90 335.5 251 70.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.6e-88 330.1 242 69.0
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 6.1e-88 328.2 238 71.0
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 6.1e-88 328.2 269 65.1
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 8.0e-88 327.8 237 70.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.4e-87 327.0 237 71.3
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.3e-87 326.2 231 71.4
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 4.0e-87 325.5 235 71.1
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 5.2e-87 325.1 228 71.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 8.8e-87 324.3 236 70.8
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.1e-86 323.9 191 88.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 2.0e-86 323.2 235 69.8
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.0e-86 323.2 274 62.8
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 7.5e-86 321.2 235 69.4
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.7e-85 320.1 256 65.2
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.7e-85 320.1 272 62.1
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 2.8e-85 319.3 234 70.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 4.8e-85 318.5 235 69.8
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 6.3e-85 318.2 234 67.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.1e-84 315.5 234 67.1
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 4.1e-84 315.5 271 61.6
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.0e-84 314.7 223 70.0
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 7.0e-84 314.7 234 67.5
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 9.1e-84 314.3 234 67.5
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.2e-83 313.9 229 70.7
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.6e-83 313.5 265 64.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.6e-83 313.5 257 65.8
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.6e-83 313.5 257 65.8
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 3.5e-83 312.4 227 68.7
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.5e-83 312.0 235 68.1
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 7.7e-83 311.2 269 61.3
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.0e-82 310.8 258 66.3
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.9e-82 309.3 223 68.6
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.0e-82 308.5 251 64.9
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 5.0e-82 308.5 280 59.6
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 6.5e-82 308.1 273 60.8
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 8.5e-82 307.8 273 61.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.5e-81 307.0 233 67.0
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 1.5e-81 307.0 265 63.4
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.9e-81 306.6 249 63.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.9e-81 306.6 253 64.4
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 4.2e-81 305.4 234 65.8
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 5.5e-81 305.1 251 64.1
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 5.5e-81 305.1 234 66.7
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 7.2e-81 304.7 252 62.3
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.2e-80 303.9 243 64.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.2e-80 303.9 243 65.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.1e-80 303.1 234 66.7
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 2.1e-80 303.1 236 67.4
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 3.6e-80 302.4 234 65.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 4.7e-80 302.0 247 64.0
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.7e-80 302.0 251 63.7
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.7e-80 302.0 249 62.2
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.0e-79 300.8 226 68.1
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 4.0e-79 298.9 215 68.8
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 6.8e-79 298.1 260 62.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 6.8e-79 298.1 233 65.7
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 8.8e-79 297.7 231 65.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 2.6e-78 296.2 236 65.3
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.7e-78 295.0 242 64.5
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.5e-78 294.7 236 64.8
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 9.8e-78 294.3 189 79.4
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.8e-77 292.7 234 65.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 3.7e-77 292.4 234 63.7
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 6.3e-77 291.6 246 61.4
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.1e-76 290.8 227 65.2
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 3.1e-76 289.3 235 65.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 7.0e-76 288.1 234 62.8
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 7.0e-76 288.1 235 63.4
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.0e-75 286.6 235 65.1
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.0e-74 282.0 236 63.1
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 6.5e-74 281.6 236 63.1
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 8.5e-74 281.2 236 63.1
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.5e-73 280.4 235 63.0
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.5e-73 279.6 234 61.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 9.4e-73 277.7 235 62.6
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.2e-72 277.3 240 63.3
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 6.1e-72 275.0 238 63.4
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.6e-67 260.4 235 58.3
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 6.6e-66 255.0 216 60.6
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-65 254.2 234 56.8
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 4.7e-64 248.8 155 80.0
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.3e-63 246.5 238 57.1
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 9.8e-62 241.1 228 58.3
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 6.4e-61 238.4 191 66.0
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-60 237.7 269 51.3
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.8e-60 236.9 214 56.5
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.7e-56 222.2 210 56.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.5e-54 217.2 187 61.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 4.9e-53 212.2 233 50.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 8.3e-53 211.5 207 57.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.3e-50 204.1 130 75.4
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.7e-50 203.8 234 49.6
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 9.8e-46 188.0 236 46.2
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 3.4e-38 162.9 195 49.7
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 8.7e-26 121.7 85 74.1
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 4.3e-25 119.4 85 72.9
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.3e-24 117.9 121 54.5
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-24 117.5 85 72.9
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.8e-24 115.9 94 62.8
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.4e-20 103.6 232 34.1
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-11 74.7 42 85.7
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-11 74.3 66 62.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 6.0e-11 72.4 66 62.1


User provided reference genes

Program Settings