Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13509 Brassica carinata HOM05D003297 ORTHO05D004027 5.4e-46 187.2 88 100.0
BcaNung03173 Brassica carinata HOM05D003297 ORTHO05D004027 5.4e-46 187.2 88 100.0
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 4.3e-35 151.0 78 91.0
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 5.6e-35 150.6 78 92.3
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 5.6e-35 150.6 78 89.7
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 5.6e-35 150.6 78 92.3
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 5.6e-35 150.6 78 92.3
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 5.6e-35 150.6 78 91.0
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 9.6e-35 149.8 78 89.7
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 1.3e-34 149.4 78 89.7
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 1.3e-34 149.4 78 89.7
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 1.3e-34 149.4 78 89.7
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 1.3e-34 149.4 78 89.7
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 2.8e-34 148.3 78 88.5
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 2.8e-34 148.3 78 88.5
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 2.8e-34 148.3 78 89.7
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 2.8e-34 148.3 78 89.7
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 3.7e-34 147.9 78 88.5
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 4.8e-34 147.5 78 87.2
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 4.8e-34 147.5 78 87.2
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 1.4e-33 146.0 78 87.2
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 5.3e-33 144.1 80 83.8
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 9.0e-33 143.3 78 84.6
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 1.3e-28 129.4 78 76.9
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 3.0e-28 128.3 88 71.6
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 5.1e-28 127.5 82 70.7
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 5.1e-28 127.5 82 70.7
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 5.1e-28 127.5 82 70.7
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 6.7e-28 127.1 78 74.4
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 6.7e-28 127.1 78 74.4
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 6.7e-28 127.1 78 74.4
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 8.7e-28 126.7 78 74.4
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 8.7e-28 126.7 78 74.4
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.5e-27 125.9 78 74.4
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 1.5e-27 125.9 82 69.5
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.9e-27 125.6 78 75.6
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 1.9e-27 125.6 79 73.4
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 1.9e-27 125.6 78 71.8
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.9e-27 125.6 78 75.6
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 2.5e-27 125.2 78 73.1
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 2.5e-27 125.2 79 72.2
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 75.6
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 75.6
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 75.6
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 75.6
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 74.4
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 3.3e-27 124.8 78 74.4
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.3e-27 124.4 78 73.1
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.3e-27 124.4 78 73.1
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 4.3e-27 124.4 79 69.6
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-27 124.0 78 71.8
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 7.4e-27 123.6 78 74.4
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 7.4e-27 123.6 78 75.6
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 7.4e-27 123.6 81 72.8
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 9.6e-27 123.2 78 71.8
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.3e-26 122.9 78 70.5
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 1.3e-26 122.9 78 70.5
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.3e-26 122.9 79 72.2
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 1.3e-26 122.9 78 74.4
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 1.3e-26 122.9 78 73.1
EL10Ac8g19289 Beta vulgaris HOM05D003297 ORTHO05D004027 1.6e-26 122.5 78 70.5
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 1.6e-26 122.5 78 70.5
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 1.6e-26 122.5 78 73.1
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 1.6e-26 122.5 78 73.1
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 2.1e-26 122.1 78 70.5
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 2.1e-26 122.1 78 71.8
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.1e-26 122.1 78 71.8
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.1e-26 122.1 78 71.8
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.1e-26 122.1 78 71.8
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 2.8e-26 121.7 78 73.1
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 2.8e-26 121.7 78 73.1
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 2.8e-26 121.7 78 71.8
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 2.8e-26 121.7 76 78.9
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 2.8e-26 121.7 78 73.1
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.7e-26 121.3 78 71.8
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 3.7e-26 121.3 78 74.4
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 4.8e-26 120.9 78 73.1
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 4.8e-26 120.9 78 74.4
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 4.8e-26 120.9 78 71.8
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 4.8e-26 120.9 78 74.4
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 4.8e-26 120.9 79 70.9
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 6.2e-26 120.6 78 71.8
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 6.2e-26 120.6 78 71.8
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 8.2e-26 120.2 78 73.1
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 8.2e-26 120.2 78 70.5
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 1.1e-25 119.8 78 71.8
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 1.1e-25 119.8 78 71.8
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 1.4e-25 119.4 78 70.5
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 1.8e-25 119.0 78 73.1
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 1.8e-25 119.0 78 70.5
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.8e-25 119.0 78 73.1
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.8e-25 119.0 78 73.1
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 2.4e-25 118.6 79 70.9
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 2.4e-25 118.6 79 70.9
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.4e-25 118.6 78 73.1
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 2.4e-25 118.6 78 74.4
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 2.4e-25 118.6 78 69.2
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 3.1e-25 118.2 79 69.6
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 3.1e-25 118.2 78 71.8
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 3.1e-25 118.2 79 70.9
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 3.1e-25 118.2 78 69.2
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 3.1e-25 118.2 78 71.8
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 4.0e-25 117.9 78 71.8
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 4.0e-25 117.9 81 67.9
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 4.0e-25 117.9 81 67.9
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 5.3e-25 117.5 78 70.5
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 5.3e-25 117.5 78 73.1
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 6.9e-25 117.1 81 66.7
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 6.9e-25 117.1 78 66.7
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 6.9e-25 117.1 78 70.5
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 6.9e-25 117.1 78 67.9
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 9.0e-25 116.7 79 69.6
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 1.2e-24 116.3 78 69.2
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 1.2e-24 116.3 78 69.2
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 1.5e-24 115.9 78 71.8
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.5e-24 115.9 78 67.9
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.5e-24 115.9 78 70.5
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.0e-24 115.5 79 69.6
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 2.0e-24 115.5 78 71.8
HanXRQChr17g0534631 Helianthus annuus HOM05D003297 ORTHO05D004027 3.4e-24 114.8 81 66.7
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 3.4e-24 114.8 85 67.1
RcHm_v2.0_Chr6g0252661 Rosa chinensis HOM05D003297 ORTHO05D004027 3.4e-24 114.8 74 74.3
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 3.4e-24 114.8 78 71.8
HanXRQChr15g0474981 Helianthus annuus HOM05D003297 ORTHO05D004027 4.5e-24 114.4 78 65.4
FAN03G2227 Fragaria x ananassa HOM05D003297 ORTHO05D004027 5.8e-24 114.0 78 67.9
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 7.6e-24 113.6 78 65.4
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 7.6e-24 113.6 79 68.4
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 1.0e-23 113.2 78 66.7
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 1.7e-23 112.5 77 68.8
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 2.2e-23 112.1 93 61.3
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 2.2e-23 112.1 84 63.1
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 3.8e-23 111.3 81 64.2
FAN10G0806 Fragaria x ananassa HOM05D003297 ORTHO05D004027 4.9e-23 110.9 71 73.2
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 8.4e-23 110.2 83 66.3
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 1.9e-22 109.0 96 60.4
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 3.5e-21 104.8 73 74.0
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 4.6e-21 104.4 78 67.9
CDE07G0254 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 1.3e-20 102.8 73 67.1
FAN06G2104 Fragaria x ananassa HOM05D003297 ORTHO05D004027 5.1e-20 100.9 69 68.1
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 8.7e-20 100.1 92 56.5
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 4.3e-19 97.8 94 52.1
CAN.G1161.54 Capsicum annuum HOM05D000052 ORTHO05D000046 7.4e-19 97.1 64 67.2
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 7.4e-19 97.1 84 58.3
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 1.3e-18 96.3 68 66.2
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 1.6e-18 95.9 78 52.6
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 2.8e-18 95.1 67 64.2
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 2.4e-17 92.0 64 64.1
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 1.5e-16 89.4 79 54.4
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 2.9e-15 85.1 85 55.3
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 3.8e-15 84.7 73 58.9
FAN10G1829 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.8e-15 84.7 52 71.2
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 3.8e-15 84.7 64 62.5
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 8.5e-15 83.6 51 72.5
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.2e-14 81.6 56 66.1
RcHm_v2.0_Chr1g0359641 Rosa chinensis HOM05D003297 ORTHO05D004027 9.4e-14 80.1 57 63.2
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.2e-13 79.7 68 58.8
Oeu050424.1 Olea europaea HOM05D003297 ORTHO05D004027 3.6e-13 78.2 73 57.5
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 4.6e-13 77.8 75 56.0
arahy.Tifrunner.gnm1.ann1.GNZ56R Arachis hypogaea HOM05D003297 ORTHO05D004027 3.9e-12 74.7 58 62.1
Aqoxy6G01653 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 8.8e-12 73.6 64 62.5
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 2.0e-11 72.4 67 53.7
HanXRQChr17g0534611 Helianthus annuus HOM05D003297 ORTHO05D004027 2.5e-11 72.0 57 59.6
A02p02390 Brassica napus HOM05D003297 ORTHO05D004027 2.4e-09 65.5 31 96.8
arahy.Tifrunner.gnm1.ann1.BJ0JYY Arachis hypogaea HOM05D003297 ORTHO05D004027 2.6e-08 62.0 62 46.8
arahy.Tifrunner.gnm1.ann1.6W6YW6 Arachis hypogaea HOM05D003297 ORTHO05D004027 4.5e-08 61.2 62 46.8
C02p06630 Brassica napus HOM05D003297 ORTHO05D004027 2.9e-07 58.5 76 48.7
arahy.Tifrunner.gnm1.ann1.BC5FZ3 Arachis hypogaea HOM05D003297 ORTHO05D004027 8.5e-07 57.0 62 43.5
arahy.Tifrunner.gnm1.ann1.J9253V Arachis hypogaea HOM05D003297 ORTHO05D004027 1.4e-06 56.2 51 56.9
BraA02t05209Z Brassica rapa HOM05D003297 ORTHO05D004027 7.2e-06 53.9 29 86.2


User provided reference genes

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