Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-95 353.2 205 100.0
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-85 320.1 204 93.6
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-70 269.2 205 82.0
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.3e-69 266.9 203 81.3
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 8.1e-69 264.2 209 80.4
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.1e-68 263.8 206 79.6
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.8e-68 263.1 206 79.6
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.8e-68 263.1 204 81.4
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 3.1e-68 262.3 146 90.4
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 6.9e-68 261.2 206 80.1
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.2e-67 260.4 205 80.5
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-67 260.0 146 89.7
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 2.0e-67 259.6 206 80.1
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.6e-67 259.2 149 87.9
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 8.4e-66 254.2 203 77.8
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.5e-65 251.5 146 85.6
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.7e-64 249.2 204 78.9
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.1e-60 237.3 209 74.6
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.1e-60 237.3 126 94.4
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-59 232.3 138 87.0
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 3.4e-59 232.3 136 82.4
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.2e-49 198.7 146 69.2
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 5.1e-47 191.8 138 68.8
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 5.1e-47 191.8 140 66.4
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 2.0e-46 189.9 149 63.8
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.6e-46 189.5 137 66.4
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 4.4e-46 188.7 121 71.9
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 8.2e-45 184.5 118 72.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.4e-44 183.7 143 65.0
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.8e-44 183.3 142 64.8
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 4.1e-44 182.2 139 64.7
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 6.9e-44 181.4 121 70.2
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.2e-43 180.6 149 61.1
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 2.6e-43 179.5 137 65.0
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.4e-43 179.1 122 69.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 3.4e-43 179.1 119 72.3
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 4.5e-43 178.7 142 62.7
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.0e-42 177.6 109 74.3
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.0e-42 177.6 139 64.0
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.3e-42 177.2 132 65.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.3e-42 177.2 117 68.4
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 1.7e-42 176.8 118 69.5
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.2e-42 176.4 118 68.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 2.2e-42 176.4 122 68.0
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.2e-42 176.4 109 72.5
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 2.2e-42 176.4 152 58.6
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 2.9e-42 176.0 117 70.1
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.9e-42 176.0 119 70.6
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 2.9e-42 176.0 145 61.4
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.9e-42 176.0 109 72.5
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 2.9e-42 176.0 121 68.6
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 3.8e-42 175.6 136 61.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 5.0e-42 175.3 119 68.1
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.0e-42 175.3 119 69.7
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 6.5e-42 174.9 148 61.5
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 8.5e-42 174.5 107 72.9
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.1e-41 174.1 117 69.2
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.1e-41 174.1 109 71.6
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.1e-41 174.1 124 66.9
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.9e-41 173.3 113 72.6
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.9e-41 173.3 140 60.7
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 3.2e-41 172.6 131 63.4
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 4.2e-41 172.2 146 61.0
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 5.5e-41 171.8 139 60.4
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 5.5e-41 171.8 127 64.6
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.2e-41 171.4 119 68.9
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 7.2e-41 171.4 119 67.2
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 9.4e-41 171.0 136 59.6
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.2e-40 170.6 151 58.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.2e-40 170.6 149 59.7
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.2e-40 170.6 138 63.0
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.2e-40 170.6 123 66.7
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.6e-40 170.2 134 64.9
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.6e-40 170.2 117 67.5
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 3.6e-40 169.1 110 68.2
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.6e-40 169.1 118 66.9
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.6e-40 169.1 110 67.3
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 4.7e-40 168.7 117 65.0
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 6.1e-40 168.3 148 56.8
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 6.1e-40 168.3 140 60.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 7.9e-40 167.9 132 63.6
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 7.9e-40 167.9 131 61.8
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.0e-39 167.5 119 66.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.4e-39 167.2 145 58.6
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.3e-39 166.4 111 67.6
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 2.3e-39 166.4 126 62.7
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.3e-39 166.4 118 66.9
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 3.9e-39 165.6 133 61.7
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 3.9e-39 165.6 133 61.7
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 5.2e-39 165.2 125 63.2
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 8.8e-39 164.5 109 67.9
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.1e-38 164.1 135 63.7
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.1e-38 164.1 129 58.9
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.0e-38 163.3 138 60.9
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.6e-38 162.9 116 66.4
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.6e-38 162.9 116 65.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 3.3e-38 162.5 119 61.3
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 4.4e-38 162.2 124 62.1
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 5.7e-38 161.8 146 54.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 7.4e-38 161.4 139 56.1
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.3e-37 160.6 106 69.8
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 2.2e-37 159.8 145 57.2
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.7e-37 159.1 126 61.9
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 8.2e-37 157.9 134 60.4
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 2.4e-36 156.4 140 57.9
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.4e-36 156.4 125 60.0
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.4e-36 156.4 145 58.6
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.1e-36 156.0 101 69.3
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 4.1e-36 155.6 138 54.3
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 7.0e-36 154.8 107 66.4
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 9.1e-36 154.5 117 61.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.2e-35 154.1 106 68.9
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.6e-35 153.7 106 66.0
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 2.6e-35 152.9 134 58.2
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.7e-35 151.4 139 59.0
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.0e-34 151.0 140 57.9
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 2.9e-34 149.4 147 53.1
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 6.5e-34 148.3 107 61.7
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-33 147.5 107 63.6
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.9e-33 146.7 113 63.7
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 9.4e-33 144.4 120 55.8
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 2.7e-32 142.9 139 58.3
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 4.7e-32 142.1 102 63.7
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.4e-31 140.6 115 59.1
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-30 137.1 102 60.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-30 137.1 102 60.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 2.0e-30 136.7 102 60.8
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-30 136.0 102 60.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 3.3e-30 136.0 102 59.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.4e-30 135.6 107 61.7
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-28 130.6 91 65.9
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.8e-28 130.2 73 80.8
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 7.0e-28 128.3 98 60.2
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.5e-27 125.9 84 66.7
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 5.9e-27 125.2 85 65.9
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-26 124.0 122 50.8
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 5.0e-26 122.1 86 62.8
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 8.5e-26 121.3 104 56.7
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 7.2e-25 118.2 91 58.2
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-24 117.5 110 52.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.5e-22 110.5 146 41.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 4.4e-22 109.0 132 47.7
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 7.5e-22 108.2 110 50.0
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.3e-21 107.5 123 42.3
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.3e-21 105.1 114 39.5
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.0e-18 97.8 80 60.0
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.9e-18 96.3 126 47.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 3.6e-16 89.4 109 45.0
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.7e-13 79.3 111 42.3
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 2.4e-12 76.6 117 41.0
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.3e-10 70.1 122 36.1
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 5.0e-10 68.9 144 34.0
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 4.0e-07 59.3 42 64.3
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.2e-06 57.8 79 38.0


User provided reference genes

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