Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13476 Brassica carinata HOM05D002679 ORTHO05D011194 3.0e-66 255.0 123 100.0
BolC2t06633H Brassica oleracea HOM05D002679 ORTHO05D011194 1.2e-64 249.6 121 99.2
BcaC03g13479 Brassica carinata HOM05D002679 ORTHO05D011194 1.6e-64 249.2 121 99.2
BcaC03g13482 Brassica carinata HOM05D002679 ORTHO05D011194 1.6e-64 249.2 121 99.2
C02p06820 Brassica napus HOM05D002679 ORTHO05D011194 3.6e-64 248.1 121 98.3
C02p06870 Brassica napus HOM05D002679 ORTHO05D011194 3.6e-64 248.1 121 98.3
C02p06990 Brassica napus HOM05D002679 ORTHO05D011194 3.6e-64 248.1 121 98.3
C02p07030 Brassica napus HOM05D002679 ORTHO05D011194 3.6e-64 248.1 121 98.3
BolC2t06631H Brassica oleracea HOM05D002679 ORTHO05D011194 3.6e-64 248.1 121 98.3
A02p02590 Brassica napus HOM05D018487 ORTHO05D011194 7.8e-59 230.3 121 90.9
BraA02t05227Z Brassica rapa HOM05D002679 ORTHO05D011194 7.8e-59 230.3 121 90.9
C02p06910 Brassica napus HOM05D002679 ORTHO05D011194 3.9e-58 228.0 145 80.7
BcaC03g13483 Brassica carinata HOM05D002679 ORTHO05D011194 1.9e-57 225.7 121 89.3
C02p06800 Brassica napus HOM05D002679 ORTHO05D011194 3.3e-57 224.9 121 89.3
C02p06810 Brassica napus HOM05D002679 ORTHO05D011194 2.1e-56 222.2 121 88.4
BcaC03g13474 Brassica carinata HOM05D002679 ORTHO05D011194 2.6e-46 188.7 121 72.7
C02p64430 Brassica napus HOM05D002679 ORTHO05D011194 9.9e-46 186.8 121 72.7
BolC2t12507H Brassica oleracea HOM05D002679 ORTHO05D011194 2.4e-44 182.2 122 72.1
BolC2t06636H Brassica oleracea HOM05D002679 ORTHO05D011194 3.9e-42 174.9 86 97.7
BcaNung04303 Brassica carinata HOM05D002679 ORTHO05D011194 1.9e-25 119.4 76 73.7
Carub.0007s2335 Capsella rubella HOM05D002679 ORTHO05D011194 4.3e-25 118.2 113 54.0
AL7G36490 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 6.3e-24 114.4 112 54.5
AL7G36480 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 1.8e-23 112.8 113 52.2
AL7G36510 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 1.8e-23 112.8 113 52.2
C02p07050 Brassica napus HOM05D002679 ORTHO05D011194 2.9e-21 105.5 64 71.9
BcaC03g18368 Brassica carinata HOM05D002679 ORTHO05D011194 1.4e-20 103.2 87 62.1
Carub.0007s3636 Capsella rubella HOM05D002679 ORTHO05D011194 3.6e-19 98.6 121 47.1
BcaNung03139 Brassica carinata HOM05D002679 ORTHO05D011194 9.7e-17 90.5 81 58.0
AL108U10030 Arabidopsis lyrata HOM05D002679 ORTHO05D012984 1.1e-15 87.0 116 43.1
Carub.0007s2334 Capsella rubella HOM05D002679 ORTHO05D011194 3.1e-15 85.5 71 57.7
Carub.0008s0956 Capsella rubella HOM05D002666 ORTHO05D004769 4.5e-14 81.6 113 38.9
Carub.0008s2459 Capsella rubella HOM05D002666 ORTHO05D004769 1.7e-13 79.7 113 40.7
AT3G19520 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 2.2e-13 79.3 107 42.1
BcaB03g14132 Brassica carinata HOM05D002679 ORTHO05D010703 8.5e-13 77.4 117 41.0
Carub.0003s1934 Capsella rubella HOM05D002679 ORTHO05D010703 4.2e-12 75.1 107 42.1
Carub.0003s1935 Capsella rubella HOM05D002679 ORTHO05D010703 4.2e-12 75.1 107 42.1
Thhalv10028328m.g Eutrema salsugineum HOM05D002679 ORTHO05D012452 4.2e-12 75.1 98 48.0
AT1G19060 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 5.5e-12 74.7 113 44.2
CARHR170750 Cardamine hirsuta HOM05D002679 ORTHO05D012311 7.2e-12 74.3 100 48.0
Carub.0007s3405 Capsella rubella HOM05D002679 ORTHO05D012311 1.2e-11 73.6 109 44.0
AL4G36830 Arabidopsis lyrata HOM05D002679 ORTHO05D012452 1.6e-11 73.2 103 43.7
AL3G32930 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 3.6e-11 72.0 107 42.1
Carub.0007s3406 Capsella rubella HOM05D002679 ORTHO05D012311 4.7e-11 71.6 107 43.9
AL1G37720 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 1.8e-10 69.7 127 37.8
BcaC09g51773 Brassica carinata HOM05D002666 ORTHO05D004769 1.8e-10 69.7 99 40.4
Carub.0004s2240 Capsella rubella HOM05D002679 ORTHO05D010703 1.8e-10 69.7 72 47.2
BraA01t00770Z Brassica rapa HOM05D002666 ORTHO05D004769 3.0e-10 68.9 99 41.4
AL4G35970 Arabidopsis lyrata HOM05D002679 ORTHO05D012452 3.9e-10 68.6 107 41.1
AL3G32940 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 5.1e-10 68.2 100 38.0
A08p11010 Brassica napus HOM05D002666 ORTHO05D004769 5.1e-10 68.2 108 39.8
A08p20500 Brassica napus HOM05D002666 ORTHO05D004769 5.1e-10 68.2 109 38.5
AL1G49380 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 6.7e-10 67.8 113 40.7
AL1G37670 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 8.8e-10 67.4 109 40.4
BcaC01g00038 Brassica carinata HOM05D002706 ORTHO05D003253 8.8e-10 67.4 118 37.3
BcaC01g00518 Brassica carinata HOM05D002666 ORTHO05D004769 8.8e-10 67.4 108 38.9
A07p13690 Brassica napus HOM05D002679 ORTHO05D010703 8.8e-10 67.4 109 39.4
BolC3t19754H Brassica oleracea HOM05D002706 ORTHO05D003253 8.8e-10 67.4 108 39.8
BolC3t20342H Brassica oleracea HOM05D002666 ORTHO05D004769 8.8e-10 67.4 108 38.9
BraA08t34119Z Brassica rapa HOM05D002666 ORTHO05D004769 8.8e-10 67.4 108 38.9
BraA08t34123Z Brassica rapa HOM05D002666 ORTHO05D004769 8.8e-10 67.4 108 38.9
AL1G35520 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.1e-09 67.0 112 40.2
BcaC06g35072 Brassica carinata HOM05D002679 ORTHO05D010703 1.1e-09 67.0 109 39.4
A08p21700 Brassica napus HOM05D002666 ORTHO05D004769 1.1e-09 67.0 108 38.9
A08p24450 Brassica napus HOM05D002666 ORTHO05D004769 1.1e-09 67.0 108 38.9
C05p43390 Brassica napus HOM05D002679 ORTHO05D010703 1.1e-09 67.0 109 39.4
C07p20140 Brassica napus HOM05D002679 ORTHO05D010703 1.1e-09 67.0 117 39.3
BolC7t42535H Brassica oleracea HOM05D002679 ORTHO05D010703 1.1e-09 67.0 117 39.3
BraA08t34400Z Brassica rapa HOM05D002666 ORTHO05D004769 1.1e-09 67.0 108 38.9
AL1G56900 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.5e-09 66.6 106 47.2
AL446U10010 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.5e-09 66.6 107 36.4
AL8G41050 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.5e-09 66.6 107 36.4
BraA01t00771Z Brassica rapa HOM05D002666 ORTHO05D004769 1.5e-09 66.6 99 41.4
AL5G38700 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 2.0e-09 66.2 103 39.8
AL7G22800 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 2.0e-09 66.2 109 40.4
BcaC09g52202 Brassica carinata HOM05D002666 ORTHO05D004769 2.0e-09 66.2 99 39.4
BolC1t00908H Brassica oleracea HOM05D002666 ORTHO05D004769 2.0e-09 66.2 99 39.4
BcaC07g38268 Brassica carinata HOM05D002666 ORTHO05D004769 2.6e-09 65.9 107 33.6
A01p08260 Brassica napus HOM05D002666 ORTHO05D004769 2.6e-09 65.9 99 40.4
A08p21690 Brassica napus HOM05D002666 ORTHO05D004769 2.6e-09 65.9 108 38.0
BraA08t34120Z Brassica rapa HOM05D002666 ORTHO05D004769 2.6e-09 65.9 108 38.0
Carub.0006s1923 Capsella rubella HOM05D002679 ORTHO05D014856 2.6e-09 65.9 103 40.8
Thhalv10004573m.g Eutrema salsugineum HOM05D002679 ORTHO05D014856 2.6e-09 65.9 103 44.7
AL3G49080 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 3.3e-09 65.5 100 44.0
BcaB03g14130 Brassica carinata HOM05D002679 ORTHO05D010703 3.3e-09 65.5 124 37.1
AL1G37710 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 4.4e-09 65.1 112 41.1
AT1G22090 Arabidopsis thaliana HOM05D002679 ORTHO05D010656 4.4e-09 65.1 112 38.4
BolC1t00917H Brassica oleracea HOM05D002666 ORTHO05D004769 4.4e-09 65.1 103 36.9
Carub.0005s1849 Capsella rubella HOM05D002679 ORTHO05D012311 4.4e-09 65.1 95 42.1
CARHR289130 Cardamine hirsuta HOM05D002666 ORTHO05D004769 4.4e-09 65.1 108 38.0
AL1G49350 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 5.7e-09 64.7 73 47.9
AL8G40780 Arabidopsis lyrata HOM05D002679 ORTHO05D012984 5.7e-09 64.7 112 38.4
A01p08210 Brassica napus HOM05D002666 ORTHO05D004769 5.7e-09 64.7 99 38.4
BraA01t00767Z Brassica rapa HOM05D002666 ORTHO05D004769 5.7e-09 64.7 99 38.4
BraA07t29124Z Brassica rapa HOM05D002679 ORTHO05D010703 5.7e-09 64.7 118 39.0
BcaB03g13318 Brassica carinata HOM05D002679 ORTHO05D010656 7.4e-09 64.3 111 36.9
Carub.0001s2632 Capsella rubella HOM05D002679 ORTHO05D010703 7.4e-09 64.3 109 36.7
AT3G57210 Arabidopsis thaliana HOM05D002679 ORTHO05D012311 9.7e-09 63.9 99 42.4
Carub.0001s2342 Capsella rubella HOM05D002679 ORTHO05D010703 9.7e-09 63.9 116 42.2
Carub.0006s1922 Capsella rubella HOM05D002679 ORTHO05D014856 9.7e-09 63.9 107 41.1
AL1G35530 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.3e-08 63.5 114 39.5
BcaB03g12623 Brassica carinata HOM05D002666 ORTHO05D004769 1.3e-08 63.5 109 37.6
AL7G22510 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.7e-08 63.2 99 34.3
AT1G02770 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 1.7e-08 63.2 76 51.3
AL7G36880 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 2.2e-08 62.8 73 47.9
AT4G29550 Arabidopsis thaliana HOM05D002666 ORTHO05D004769 2.2e-08 62.8 109 37.6
BcaC09g52197 Brassica carinata HOM05D002666 ORTHO05D004769 2.2e-08 62.8 103 36.9
C01p09250 Brassica napus HOM05D002666 ORTHO05D004769 2.2e-08 62.8 103 36.9
BcaC09g51769 Brassica carinata HOM05D002666 ORTHO05D004769 2.8e-08 62.4 99 39.4
A07p13740 Brassica napus HOM05D002679 ORTHO05D010703 3.7e-08 62.0 112 38.4
Carub.0001s3874 Capsella rubella HOM05D002679 ORTHO05D010656 3.7e-08 62.0 105 43.8
AL4G17220 Arabidopsis lyrata HOM05D002666 ORTHO05D015915 4.8e-08 61.6 107 39.3
BcaC07g38442 Brassica carinata HOM05D002679 ORTHO05D010656 4.8e-08 61.6 116 39.7
C08p12110 Brassica napus HOM05D002679 ORTHO05D010656 4.8e-08 61.6 116 39.7
BraA01t00796Z Brassica rapa HOM05D002666 ORTHO05D004769 4.8e-08 61.6 120 38.3
A08p35020 Brassica napus HOM05D002679 ORTHO05D010656 6.3e-08 61.2 122 37.7
CARHR133380 Cardamine hirsuta HOM05D002679 ORTHO05D012452 8.2e-08 60.8 101 38.6
CARHR272930 Cardamine hirsuta HOM05D002666 ORTHO05D004769 8.2e-08 60.8 108 38.0
AL7G22830 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.4e-07 60.1 109 36.7
AT1G23970 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 1.4e-07 60.1 117 39.3
AT3G25080 Arabidopsis thaliana HOM05D002679 ORTHO05D014856 1.4e-07 60.1 108 40.7
A01p08490 Brassica napus HOM05D002666 ORTHO05D004769 1.4e-07 60.1 120 37.5
Thhalv10027954m.g Eutrema salsugineum HOM05D002679 ORTHO05D012452 1.4e-07 60.1 110 40.0
AT1G23950 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 1.8e-07 59.7 112 39.3
A08p20570 Brassica napus HOM05D002666 ORTHO05D004769 1.8e-07 59.7 107 33.6
AL6G32810 Arabidopsis lyrata HOM05D002679 ORTHO05D014856 2.4e-07 59.3 106 37.7
BcaC07g38416 Brassica carinata HOM05D000200 ORTHO05D000262 2.4e-07 59.3 112 36.6
BolC3t21215H Brassica oleracea HOM05D002666 ORTHO05D004769 2.4e-07 59.3 110 35.5
C03p89040 Brassica napus HOM05D002666 ORTHO05D004769 3.1e-07 58.9 110 35.5
BraA01t00797Z Brassica rapa HOM05D002666 ORTHO05D004769 4.1e-07 58.5 121 37.2
A08p19510 Brassica napus HOM05D002666 ORTHO05D004769 5.3e-07 58.2 74 44.6
BolC8t47165H Brassica oleracea HOM05D002679 ORTHO05D010656 5.3e-07 58.2 120 38.3
BraA08t33912Z Brassica rapa HOM05D002666 ORTHO05D004769 5.3e-07 58.2 74 44.6
BraA08t34013Z Brassica rapa HOM05D002666 ORTHO05D004769 5.3e-07 58.2 107 32.7
Carub.0001s3873 Capsella rubella HOM05D002679 ORTHO05D010656 5.3e-07 58.2 105 41.9
Carub.0006s3079 Capsella rubella HOM05D002679 ORTHO05D012452 5.3e-07 58.2 106 42.5
BcaC09g52209 Brassica carinata HOM05D002666 ORTHO05D004769 7.0e-07 57.8 120 36.7
C01p09850 Brassica napus HOM05D002666 ORTHO05D004769 7.0e-07 57.8 120 36.7
BolC1t00947H Brassica oleracea HOM05D002666 ORTHO05D004769 7.0e-07 57.8 120 36.7
CARHR168030 Cardamine hirsuta HOM05D002679 ORTHO05D014856 7.0e-07 57.8 106 38.7
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 9.1e-07 57.4 117 35.9
C01p09920 Brassica napus HOM05D002666 ORTHO05D004769 9.1e-07 57.4 121 38.0
C08p10150 Brassica napus HOM05D002666 ORTHO05D004769 9.1e-07 57.4 107 32.7
BolC1t00954H Brassica oleracea HOM05D002666 ORTHO05D004769 9.1e-07 57.4 121 38.0
BolC8t48693H Brassica oleracea HOM05D002666 ORTHO05D004769 9.1e-07 57.4 107 32.7
Thhalv10027826m.g Eutrema salsugineum HOM05D002679 ORTHO05D012311 9.1e-07 57.4 96 43.8
AL2G22820 Arabidopsis lyrata HOM05D002679 ORTHO05D023662 1.2e-06 57.0 71 45.1
BcaC07g38441 Brassica carinata HOM05D002679 ORTHO05D010656 1.2e-06 57.0 117 35.9
C08p03630 Brassica napus HOM05D002679 ORTHO05D010656 1.2e-06 57.0 115 37.4
AL7G22850 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.5e-06 56.6 98 36.7
BolC1t00942H Brassica oleracea HOM05D002666 ORTHO05D004769 1.5e-06 56.6 120 35.8
BraA08t35412Z Brassica rapa HOM05D002679 ORTHO05D010656 1.5e-06 56.6 121 37.2
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 2.0e-06 56.2 116 33.6
BcaC09g52215 Brassica carinata HOM05D002666 ORTHO05D004769 2.0e-06 56.2 120 35.8
BcaB03g13329 Brassica carinata HOM05D002679 ORTHO05D010656 2.6e-06 55.8 115 38.3
BcaC08g44542 Brassica carinata HOM05D002679 ORTHO05D012311 2.6e-06 55.8 95 43.2
A01p06350 Brassica napus HOM05D002666 ORTHO05D004769 2.6e-06 55.8 105 34.3
C06p20110 Brassica napus HOM05D002679 ORTHO05D010656 2.6e-06 55.8 95 43.2
C08p12090 Brassica napus HOM05D002679 ORTHO05D010656 2.6e-06 55.8 116 36.2
BolC6t37193H Brassica oleracea HOM05D002679 ORTHO05D010656 2.6e-06 55.8 95 43.2
BraA01t00600Z Brassica rapa HOM05D002666 ORTHO05D004769 2.6e-06 55.8 105 34.3
Carub.0006s2997 Capsella rubella HOM05D002679 ORTHO05D012452 2.6e-06 55.8 71 43.7
BcaC09g52206 Brassica carinata HOM05D002666 ORTHO05D004769 3.4e-06 55.5 121 36.4
C01p09860 Brassica napus HOM05D002666 ORTHO05D004769 3.4e-06 55.5 121 36.4
BolC1t00948H Brassica oleracea HOM05D002666 ORTHO05D004769 3.4e-06 55.5 121 36.4
Carub.0007s1098 Capsella rubella HOM05D002666 ORTHO05D004769 3.4e-06 55.5 110 37.3
BcaC09g51772 Brassica carinata HOM05D002666 ORTHO05D012460 4.5e-06 55.1 110 35.5
Carub.0001s2694 Capsella rubella HOM05D002679 ORTHO05D010703 4.5e-06 55.1 76 36.8
Aa31LG4G17100 Aethionema arabicum HOM05D002666 ORTHO05D004769 5.9e-06 54.7 115 33.0
BcaC05g26430 Brassica carinata HOM05D002679 ORTHO05D012311 7.7e-06 54.3 106 41.5
C01p09810 Brassica napus HOM05D002666 ORTHO05D004769 7.7e-06 54.3 123 35.8
C05p06420 Brassica napus HOM05D002679 ORTHO05D020120 7.7e-06 54.3 112 31.2
Carub.0003s3390 Capsella rubella HOM05D002679 ORTHO05D012452 7.7e-06 54.3 101 37.6


User provided reference genes

Program Settings