Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 9.5e-95 350.1 172 100.0
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.9e-71 272.7 133 100.0
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.9e-71 272.7 133 100.0
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 5.1e-56 221.5 211 61.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 4.3e-55 218.4 203 59.6
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 3.9e-48 195.3 202 56.9
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.5e-47 193.4 202 56.4
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.4e-45 186.0 183 60.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 3.1e-45 185.7 203 55.7
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.5e-44 183.3 218 50.9
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.7e-43 179.9 215 51.6
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.3e-40 170.2 216 48.6
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 5.3e-37 158.3 178 55.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 9.0e-37 157.5 230 46.1
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.3e-35 153.7 222 44.6
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.9e-32 142.1 219 43.8
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 5.1e-32 141.7 177 49.2
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 7.4e-31 137.9 178 49.4
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.3e-30 137.1 238 40.8
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 8.2e-30 134.4 175 45.1
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 8.2e-30 134.4 175 45.1
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.1e-29 134.0 150 49.3
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-29 133.7 175 45.1
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.8e-29 133.3 152 51.3
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 6.9e-29 131.3 151 48.3
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 6.9e-29 131.3 151 48.3
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 2.0e-28 129.8 189 45.5
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 7.6e-28 127.9 167 50.3
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 7.6e-28 127.9 180 45.6
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.0e-27 127.5 186 45.7
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.0e-27 127.5 153 47.7
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.3e-27 127.1 194 42.3
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.7e-27 126.7 161 46.6
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 5.0e-27 125.2 200 42.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 6.5e-27 124.8 165 43.0
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-26 123.6 177 42.9
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.4e-26 123.6 176 43.2
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.9e-26 123.2 180 43.9
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.2e-26 122.5 145 48.3
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.2e-26 122.5 196 43.4
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.2e-26 122.1 179 41.9
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.2e-26 122.1 146 48.6
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 5.5e-26 121.7 176 44.3
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.2e-25 120.6 194 41.8
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.6e-25 120.2 182 44.0
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.6e-25 119.0 139 48.2
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 3.6e-25 119.0 139 48.2
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 7.9e-25 117.9 137 44.5
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.0e-24 117.5 190 41.6
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 1.3e-24 117.1 141 47.5
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.8e-24 116.7 177 42.4
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.8e-24 116.7 154 46.1
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 2.3e-24 116.3 153 45.8
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 6.7e-24 114.8 180 41.7
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.1e-23 114.0 139 46.8
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.1e-23 114.0 185 43.2
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.9e-23 113.2 159 43.4
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 3.3e-23 112.5 181 43.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 4.3e-23 112.1 144 42.4
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 7.4e-23 111.3 146 43.8
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 9.7e-23 110.9 141 44.7
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.3e-22 110.5 161 44.1
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.7e-22 110.2 153 43.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 2.2e-22 109.8 154 40.9
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 2.2e-22 109.8 158 42.4
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.2e-22 109.8 153 41.2
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 2.8e-22 109.4 200 38.5
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.8e-22 109.4 193 38.9
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 4.8e-22 108.6 140 45.7
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 6.3e-22 108.2 131 43.5
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 6.3e-22 108.2 180 38.3
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 8.2e-22 107.8 131 48.9
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 8.2e-22 107.8 177 36.2
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.4e-21 107.1 150 44.0
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.4e-21 107.1 158 37.3
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.8e-21 106.7 151 43.0
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 2.4e-21 106.3 137 43.1
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.1e-21 105.9 179 39.7
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 6.9e-21 104.8 161 43.5
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 6.9e-21 104.8 171 39.8
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 9.1e-21 104.4 161 43.5
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 9.1e-21 104.4 154 42.2
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 9.1e-21 104.4 149 42.3
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.2e-20 104.0 165 37.6
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 2.0e-20 103.2 146 41.1
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.6e-20 102.8 138 42.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 5.9e-20 101.7 158 40.5
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 5.9e-20 101.7 150 41.3
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 7.7e-20 101.3 162 38.9
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.0e-19 100.9 164 38.4
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.0e-19 100.9 182 36.8
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.7e-19 100.1 159 39.6
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.7e-19 100.1 132 40.2
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.8e-19 99.0 177 40.7
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 3.8e-19 99.0 146 42.5
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 3.8e-19 99.0 144 38.2
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.5e-18 96.3 163 39.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 3.2e-18 95.9 172 38.4
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.2e-18 95.9 137 40.9
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 9.4e-18 94.4 163 35.6
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-17 94.0 154 35.7
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.1e-17 93.2 176 36.9
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.1e-17 93.2 144 39.6
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 2.7e-17 92.8 207 36.7
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 3.6e-17 92.4 134 41.0
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.0e-16 90.9 173 39.9
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.4e-16 90.5 163 36.8
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.4e-16 90.5 198 31.8
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.4e-16 90.5 199 31.7
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.8e-16 90.1 182 35.2
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.3e-16 89.7 136 40.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.9e-16 89.0 216 33.8
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 3.9e-16 89.0 121 43.0
A02p02660 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-15 87.4 51 86.3
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 1.1e-15 87.4 139 40.3
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 5.7e-15 85.1 148 38.5
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 9.7e-15 84.3 167 38.3
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.3e-14 84.0 133 38.3
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 3.7e-14 82.4 118 39.0
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 4.1e-13 79.0 140 37.1
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 6.9e-13 78.2 120 39.2
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 2.0e-12 76.6 130 39.2
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.0e-12 76.6 83 43.4
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.9e-11 72.8 148 35.8
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 5.0e-11 72.0 128 39.1
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 8.5e-11 71.2 160 35.0
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 2.5e-10 69.7 118 35.6
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.2e-10 68.9 149 33.6
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 5.5e-10 68.6 158 32.9
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 9.4e-10 67.8 91 41.8
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.1e-09 66.6 88 43.2
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 3.6e-09 65.9 92 47.8
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.0e-08 64.3 102 40.2
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.8e-08 63.5 127 33.9
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 5.2e-08 62.0 131 31.3
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.5e-07 60.5 127 32.3
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 2.8e-06 56.2 26 92.3
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 2.8e-06 56.2 26 92.3


User provided reference genes

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