Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 0.0e+00 1318.1 686 100.0
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 0.0e+00 1226.1 670 95.8
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 0.0e+00 1143.3 794 79.1
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 0.0e+00 1125.9 791 78.6
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 0.0e+00 1085.9 672 87.1
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 5.6e-231 804.7 691 67.0
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 7.3e-231 804.3 697 66.6
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 4.0e-229 798.5 688 66.7
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 5.2e-229 798.1 692 66.2
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 3.7e-198 695.7 598 66.6
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 3.6e-193 679.1 545 70.8
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.3e-166 590.9 929 44.0
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 9.0e-80 302.4 911 31.7
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 2.9e-78 297.4 909 31.0
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 6.5e-78 296.2 504 41.5
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.5e-74 285.0 712 34.8
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 9.1e-72 275.8 988 28.7
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 2.6e-71 274.2 733 33.8
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 7.7e-71 272.7 789 32.1
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.2e-69 266.9 913 28.4
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 6.7e-67 259.6 937 27.7
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 7.4e-66 256.1 784 29.7
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 1.7e-65 255.0 637 33.0
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 4.8e-65 253.4 804 29.4
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 1.4e-64 251.9 514 37.9
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 3.1e-64 250.8 497 38.6
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 7.7e-63 246.1 736 30.6
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 2.9e-62 244.2 974 27.5
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 5.0e-62 243.4 581 34.3
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 6.1e-60 236.5 515 36.5
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.8e-59 235.0 959 27.6
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 3.9e-59 233.8 548 35.4
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 1.1e-58 232.3 681 30.2
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.3e-57 228.8 484 36.2
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.2e-57 226.1 638 32.0
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.2e-57 226.1 554 33.2
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 7.0e-56 223.0 951 26.9
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 2.2e-54 218.0 345 44.9
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 2.2e-54 218.0 638 32.1
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 2.2e-54 218.0 957 27.6
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 5.0e-54 216.9 607 32.3
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.1e-53 215.7 496 35.5
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.6e-52 210.7 559 31.1
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 3.6e-52 210.7 504 33.7
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 4.0e-51 207.2 739 28.1
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 5.2e-51 206.8 487 35.7
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 8.8e-51 206.1 492 35.6
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 8.8e-51 206.1 488 35.5
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 5.7e-50 203.4 488 35.5
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 1.3e-49 202.2 530 32.1
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 4.8e-49 200.3 456 35.1
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 7.0e-48 196.4 636 31.3
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 2.0e-47 194.9 563 32.5
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 4.5e-47 193.7 544 32.5
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 7.7e-47 193.0 929 25.4
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 1.7e-46 191.8 618 30.4
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 2.5e-45 188.0 558 29.7
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 7.2e-45 186.4 967 24.0
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.7e-44 184.5 812 27.0
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 9.8e-42 176.0 867 25.1
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 1.3e-41 175.6 548 30.3
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 6.3e-41 173.3 399 35.1
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.1e-40 172.6 870 26.3
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 1.6e-39 168.7 526 32.5
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 4.5e-39 167.2 865 25.1
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.0e-38 166.0 690 27.1
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 1.1e-37 162.5 521 31.7
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 2.8e-36 157.9 902 23.3
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 1.3e-33 149.1 411 32.8
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 1.3e-33 149.1 631 28.2
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 4.5e-31 140.6 603 27.0
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 4.5e-31 140.6 725 25.0
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 1.3e-30 139.0 777 24.3
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 8.9e-27 126.3 441 29.0
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 1.5e-26 125.6 334 32.3
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 4.9e-25 120.6 208 38.9
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 1.2e-23 115.9 353 30.6
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 4.6e-23 114.0 1002 21.4
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 1.2e-20 105.9 889 22.2
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 8.0e-20 103.2 427 26.0
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 8.9e-19 99.8 662 24.2
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.5e-15 87.8 234 30.8
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 7.8e-15 86.7 109 40.4
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 3.3e-13 81.3 238 31.1
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 3.3e-13 81.3 347 24.2
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 1.6e-12 79.0 436 23.6
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.1e-12 78.6 293 26.6
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 2.8e-12 78.2 271 27.3
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 6.2e-12 77.0 84 47.6
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 6.2e-12 77.0 161 31.7
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 8.1e-12 76.6 227 28.2
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 8.1e-12 76.6 227 28.2
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 1.4e-11 75.9 460 23.5
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 1.4e-11 75.9 460 23.5
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.4e-11 75.9 308 24.0
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 2.3e-11 75.1 456 23.9
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 4.0e-11 74.3 111 36.0
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 4.0e-11 74.3 227 28.2
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 4.0e-11 74.3 371 25.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 6.8e-11 73.6 312 26.0
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.2e-10 72.8 160 30.6
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.2e-10 72.8 378 23.3
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.5e-10 72.4 670 20.6
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 2.6e-10 71.6 91 44.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 3.4e-10 71.2 278 25.9
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 4.4e-10 70.9 152 30.3
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.7e-09 68.9 181 30.4
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 1.7e-09 68.9 76 46.1
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.2e-09 68.6 619 20.5
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.2e-09 68.6 223 23.3
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 2.2e-09 68.6 280 29.3
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 2.9e-09 68.2 276 26.1
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.9e-09 68.2 103 35.9
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 4.9e-09 67.4 220 30.0
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 8.3e-09 66.6 308 21.8
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 1.1e-08 66.2 233 28.8
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.4e-08 65.9 141 29.1
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 1.4e-08 65.9 110 33.6
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 1.9e-08 65.5 188 28.2
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.9e-08 65.5 228 24.1
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.9e-08 65.5 158 28.5
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 2.4e-08 65.1 305 28.2
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 4.1e-08 64.3 416 21.9
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 4.1e-08 64.3 764 22.3
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 5.4e-08 63.9 149 28.9
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.2e-07 62.8 208 26.9
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.6e-07 62.4 110 30.0
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 1.6e-07 62.4 304 24.7
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 1.6e-07 62.4 138 29.0
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.1e-07 62.0 181 27.6
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.1e-07 62.0 115 36.5
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 2.1e-07 62.0 292 23.6
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 2.7e-07 61.6 234 23.5
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 3.5e-07 61.2 245 24.5
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 3.5e-07 61.2 152 29.6
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 4.6e-07 60.8 110 32.7
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 4.6e-07 60.8 461 21.5
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 4.6e-07 60.8 150 26.7
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 4.6e-07 60.8 111 31.5
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 4.6e-07 60.8 147 29.3
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 6.0e-07 60.5 134 29.1
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 6.0e-07 60.5 420 21.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 6.0e-07 60.5 144 25.7
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 6.0e-07 60.5 288 26.4
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 6.0e-07 60.5 162 26.5
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 7.8e-07 60.1 301 25.2
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 7.8e-07 60.1 319 21.3
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 7.8e-07 60.1 270 23.7
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 7.8e-07 60.1 317 21.1
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 7.8e-07 60.1 210 27.6
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 1.0e-06 59.7 320 22.8
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.0e-06 59.7 104 31.7
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 1.0e-06 59.7 301 25.6
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 1.3e-06 59.3 150 26.0
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.3e-06 59.3 143 25.2
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.3e-06 59.3 276 25.0
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.7e-06 58.9 302 24.2
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 1.7e-06 58.9 282 22.7
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 1.7e-06 58.9 108 30.6
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.7e-06 58.9 409 20.8
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.7e-06 58.9 129 31.0
CsaV3_5G036320 Cucumis sativus L. HOM05D007562 ORTHO05D009721 2.3e-06 58.5 90 38.9
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.3e-06 58.5 465 21.9
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 2.3e-06 58.5 471 21.4
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 3.0e-06 58.2 103 34.0
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 3.0e-06 58.2 103 34.0
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 3.0e-06 58.2 296 22.3
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.0e-06 58.2 307 23.8
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 3.9e-06 57.8 100 35.0
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 3.9e-06 57.8 292 23.6
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 3.9e-06 57.8 316 25.6
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 5.1e-06 57.4 464 22.2
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 5.1e-06 57.4 296 24.7
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 5.1e-06 57.4 320 24.4
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 6.6e-06 57.0 93 36.6
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 6.6e-06 57.0 289 22.5
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 8.6e-06 56.6 187 27.3
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 8.6e-06 56.6 103 33.0
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 8.6e-06 56.6 141 24.1


User provided reference genes

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