Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 0.0e+00 1114.0 571 100.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 0.0e+00 1114.0 571 100.0
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 0.0e+00 1114.0 571 100.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 0.0e+00 1096.3 565 99.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 0.0e+00 1096.3 565 99.1
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.6e-311 1072.0 567 96.5
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 4.7e-311 1070.5 571 96.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 4.7e-311 1070.5 571 96.7
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-310 1068.5 571 96.1
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.2e-308 1062.4 565 95.8
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.3e-305 1052.4 565 94.7
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.6e-303 1045.4 565 94.2
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.0e-302 1041.2 600 91.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 4.0e-299 1030.8 571 93.7
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 9.9e-298 1026.2 575 93.2
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 4.6e-295 1017.3 571 91.9
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 4.8e-276 954.1 548 89.2
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.9e-270 934.5 566 84.5
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.7e-263 911.8 476 97.1
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.5e-263 911.4 554 83.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 7.9e-263 910.2 558 83.2
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.3e-262 908.7 569 82.4
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-262 908.7 552 83.2
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.9e-262 907.9 552 83.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.8e-260 901.7 554 82.3
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.8e-260 901.7 503 88.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.7e-260 901.4 549 83.4
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.1e-259 899.8 565 82.3
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 4.0e-259 897.9 564 81.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.4e-258 894.8 524 85.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.0e-257 893.3 554 81.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.3e-257 892.9 554 81.4
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.9e-257 891.7 524 84.5
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.9e-257 891.7 565 81.6
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 6.5e-257 890.6 555 81.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 8.4e-257 890.2 513 86.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.2e-255 886.3 558 81.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 6.1e-255 884.0 554 80.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 6.1e-255 884.0 563 80.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 6.1e-255 884.0 523 83.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.0e-254 883.2 563 79.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.8e-254 882.5 568 79.4
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.8e-254 882.5 571 79.3
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.3e-254 882.1 550 81.6
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.0e-254 881.7 565 80.2
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 5.1e-254 880.9 529 83.4
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 6.7e-254 880.6 555 80.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 8.7e-254 880.2 561 79.5
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-253 879.8 531 84.2
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.5e-253 878.6 557 79.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.3e-253 878.2 566 80.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 9.7e-253 876.7 557 80.1
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-252 874.8 563 79.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.7e-252 874.8 533 83.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.1e-251 873.2 548 81.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.4e-251 872.8 543 81.8
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.4e-251 872.8 563 79.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.8e-251 872.5 540 81.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.8e-251 872.5 558 79.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.8e-251 872.5 538 82.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.4e-251 872.1 576 77.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.4e-251 872.1 559 79.2
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.1e-251 871.7 525 83.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.1e-251 871.7 572 78.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 5.3e-251 870.9 563 78.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 9.0e-251 870.2 541 80.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 9.0e-251 870.2 536 82.1
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.2e-250 869.8 566 78.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.5e-250 869.4 544 80.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.0e-250 869.0 542 81.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.6e-250 868.6 525 82.7
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.5e-250 867.8 589 76.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 5.9e-250 867.5 556 80.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 7.7e-250 867.1 541 80.6
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 7.7e-250 867.1 574 77.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 7.7e-250 867.1 555 78.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-249 865.9 537 80.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.9e-249 865.1 561 78.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.9e-249 865.1 563 77.8
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-249 864.8 559 79.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 5.0e-249 864.4 544 79.8
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.5e-249 863.6 562 78.3
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.2e-248 861.7 521 82.9
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.6e-247 857.8 566 78.1
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.8e-246 855.9 561 78.4
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-246 855.9 551 78.9
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.7e-246 854.0 556 78.1
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.5e-245 852.8 546 78.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 7.4e-245 850.5 561 77.4
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.7e-244 849.4 522 80.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.3e-244 847.4 526 79.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.2e-244 847.0 549 78.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.3e-243 844.3 560 76.8
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 7.2e-240 833.9 551 76.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 9.4e-240 833.6 568 74.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.0e-238 830.1 552 76.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.9e-238 828.2 563 77.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-237 826.2 549 76.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.0e-234 815.8 558 74.9
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.5e-233 810.8 468 85.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 6.1e-231 804.3 571 72.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.6e-223 778.5 570 73.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 8.8e-222 773.9 513 72.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-220 769.2 480 80.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.5e-218 761.5 501 72.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.9e-218 761.1 517 74.9
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 5.9e-218 761.1 557 68.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.1e-216 756.9 510 71.2
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.4e-213 745.3 476 78.8
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 5.9e-210 734.6 405 90.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 9.8e-205 717.2 445 80.9
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-201 706.8 445 80.0
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 5.6e-200 701.4 545 65.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.4e-197 691.8 530 68.7
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.9e-195 686.4 543 66.3
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.3e-192 674.5 539 63.1
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.7e-188 662.1 578 64.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 6.4e-188 661.4 562 65.8
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.1e-187 660.6 470 70.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 5.4e-187 658.3 530 64.5
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.3e-185 653.7 527 61.1
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.1e-175 619.8 549 63.2
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 9.6e-168 594.3 318 90.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.6e-161 571.6 512 59.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.8e-159 566.2 356 83.1
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.8e-159 565.5 545 57.4
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.6e-157 559.7 495 59.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-157 559.3 495 59.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.5e-157 558.9 494 59.7
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.5e-157 558.9 454 62.1
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-156 557.4 492 60.8
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.1e-138 496.9 331 73.4
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.7e-133 478.4 492 52.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.3e-124 451.1 536 46.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.8e-111 406.0 597 44.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 3.6e-106 389.8 547 41.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-99 367.1 428 49.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.9e-89 332.0 346 55.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.0e-88 330.9 440 41.6
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.4e-71 272.7 171 83.6
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.3e-67 260.0 185 67.6
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.8e-65 252.7 554 36.5
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.1e-62 242.7 256 52.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 5.8e-56 223.0 410 38.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 2.4e-49 201.1 129 77.5
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.2e-46 190.7 507 31.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-43 181.8 105 81.9
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.4e-40 170.6 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-37 162.2 117 76.1
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.7e-37 161.0 80 100.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.9e-29 132.9 102 75.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-27 129.0 91 76.9
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.5e-27 127.9 137 52.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 7.2e-22 109.8 71 83.1
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-21 109.0 65 84.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.9e-19 101.7 85 62.4
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 4.1e-17 94.0 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.0e-16 91.7 50 86.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.9e-14 85.1 53 81.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.9e-14 85.1 98 54.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 9.4e-14 82.8 55 78.2
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-12 76.3 49 75.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 5.7e-11 73.6 43 83.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.8e-09 68.6 94 40.4
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.0e-08 65.1 78 43.6
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.7e-08 63.2 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-07 62.4 46 63.0
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.1e-06 59.3 50 58.0


User provided reference genes

Program Settings