Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.2e-78 295.0 152 100.0
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 9.3e-70 266.9 150 90.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.2e-62 241.9 151 84.1
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 3.2e-62 241.9 152 84.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.2e-62 241.9 151 84.1
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-56 221.9 159 77.4
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 3.4e-56 221.9 159 77.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-55 219.9 159 76.7
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 4.6e-53 211.5 160 76.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 4.8e-50 201.4 159 74.2
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 7.7e-48 194.1 159 71.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.9e-46 189.5 161 70.2
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 2.5e-46 189.1 160 70.0
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-43 179.5 159 67.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.7e-43 177.9 158 69.6
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.7e-42 176.4 164 63.4
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.8e-42 175.6 154 65.6
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-42 174.5 159 67.9
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 3.1e-41 172.2 159 66.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 7.0e-41 171.0 159 66.7
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-40 170.2 159 66.7
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.6e-40 169.9 165 64.8
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.3e-36 156.0 168 58.3
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.2e-36 154.8 170 56.5
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.5e-35 153.3 167 55.1
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-33 146.7 167 56.3
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-33 146.7 169 55.6
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-33 146.7 169 55.6
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-33 146.7 167 56.3
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-31 139.8 88 83.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.9e-30 136.3 167 53.9
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.2e-30 135.2 156 55.8
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.3e-28 129.4 164 50.6
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.3e-28 129.4 171 50.3
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.0e-28 128.6 167 49.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 8.8e-28 127.5 167 46.7
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.7e-27 124.8 149 53.7
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-26 123.6 152 52.0
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.7e-26 122.1 162 51.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 4.1e-25 118.6 161 51.6
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 4.1e-25 118.6 152 50.0
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 4.1e-25 118.6 152 50.0
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 5.0e-23 111.7 140 50.7
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 9.5e-22 107.5 176 36.9
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-21 107.1 189 38.6
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.6e-21 106.7 184 38.6
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.1e-21 106.3 192 38.0
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.1e-21 106.3 192 38.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.8e-21 105.9 189 38.6
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.8e-21 105.9 177 41.8
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 3.6e-21 105.5 187 38.0
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.6e-21 105.5 185 37.3
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.7e-21 105.1 192 38.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.7e-21 105.1 179 39.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 8.0e-21 104.4 187 36.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 8.0e-21 104.4 187 38.5
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.0e-20 104.0 188 37.8
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.4e-20 103.6 173 38.7
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 4.0e-20 102.1 186 39.8
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-20 102.1 157 41.4
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.0e-20 102.1 198 35.9
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.2e-19 100.5 189 37.0
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.5e-19 100.1 179 39.7
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.5e-19 100.1 186 38.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.6e-19 99.4 161 42.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.4e-19 99.0 167 37.7
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.4e-19 99.0 186 39.2
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.4e-19 98.6 189 36.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 4.4e-19 98.6 179 41.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-19 98.2 160 40.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 5.7e-19 98.2 176 36.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.3e-18 97.1 170 39.4
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.3e-18 97.1 178 38.2
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.3e-18 97.1 94 54.3
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.7e-18 96.7 153 38.6
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.2e-18 96.3 182 35.7
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.8e-18 95.9 170 39.4
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 3.7e-18 95.5 132 47.0
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 3.7e-18 95.5 132 47.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.7e-18 95.5 177 40.1
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 4.9e-18 95.1 142 43.0
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.9e-18 95.1 177 41.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.3e-18 94.7 170 39.4
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.3e-18 94.7 170 38.8
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.3e-18 94.7 186 32.3
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 8.3e-18 94.4 111 52.3
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 8.3e-18 94.4 111 52.3
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.3e-18 94.4 177 40.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 8.3e-18 94.4 177 40.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-17 93.6 154 42.2
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.8e-17 93.2 163 37.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-17 93.2 177 40.1
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.4e-17 92.8 94 51.1
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-17 92.8 177 40.1
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.4e-17 92.8 158 37.3
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-17 92.4 111 53.2
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-17 92.4 177 40.1
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.0e-17 91.3 177 39.5
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 9.2e-17 90.9 179 35.2
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.6e-16 90.1 169 37.3
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.6e-16 90.1 164 37.8
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-16 90.1 169 32.5
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-16 90.1 169 32.5
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-16 89.7 112 50.9
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-16 89.4 113 50.4
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.5e-16 89.0 183 33.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 4.5e-16 88.6 142 37.3
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 5.9e-16 88.2 181 35.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 5.9e-16 88.2 166 34.9
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.0e-15 87.4 95 50.5
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.3e-15 87.0 89 51.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.7e-15 86.7 94 50.0
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 2.9e-15 85.9 168 33.9
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 3.8e-15 85.5 172 34.3
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 3.8e-15 85.5 168 35.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 5.0e-15 85.1 174 33.3
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 6.6e-15 84.7 160 35.0
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.6e-15 84.7 131 37.4
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 8.6e-15 84.3 159 39.0
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.6e-15 84.3 184 35.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.6e-15 84.3 184 35.9
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.1e-14 84.0 181 34.8
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.5e-14 83.6 190 31.6
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.9e-14 83.2 168 38.1
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.9e-14 83.2 184 34.8
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.9e-14 83.2 77 51.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.5e-14 82.8 174 30.5
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 3.3e-14 82.4 180 33.9
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 3.3e-14 82.4 172 34.9
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 7.3e-14 81.3 84 57.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 9.5e-14 80.9 218 31.7
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.6e-13 80.1 77 50.6
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.1e-13 79.7 104 43.3
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.8e-13 79.3 73 53.4
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 6.1e-13 78.2 83 48.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.8e-12 76.6 129 38.0
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.8e-12 76.6 149 35.6
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 5.2e-12 75.1 83 50.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.0e-11 73.2 148 36.5
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 2.0e-11 73.2 94 41.5
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 2.6e-11 72.8 75 52.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 9.8e-11 70.9 101 41.6
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 3.7e-10 68.9 148 33.1
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-10 68.9 133 40.6
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-10 68.9 133 40.6
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.7e-10 68.9 201 30.3
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.1e-09 67.4 128 32.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.2e-09 65.9 148 31.8
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 7.0e-09 64.7 89 43.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 7.0e-09 64.7 151 29.1
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 9.2e-09 64.3 142 38.7
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-08 63.9 46 63.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-08 63.9 46 63.0
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.2e-08 63.9 73 47.9
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 3.5e-08 62.4 152 31.6
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.5e-08 62.4 47 57.4
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 4.6e-08 62.0 124 38.7
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 7.8e-08 61.2 44 68.2
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.0e-07 60.8 147 30.6
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.3e-07 59.7 203 26.6
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 3.9e-07 58.9 45 66.7
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.9e-07 58.9 79 40.5
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 5.0e-07 58.5 182 27.5
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.5e-06 57.0 158 31.0
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 2.5e-06 56.2 73 38.4
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 3.3e-06 55.8 173 30.6


User provided reference genes

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