Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 2.0e-22 108.2 56 100.0
BcaC03g13345 Brassica carinata HOM05D004589 ORTHO05D023960 2.5e-20 101.3 52 100.0
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 4.3e-20 100.5 58 93.1
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 4.3e-20 100.5 58 93.1
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 5.2e-10 67.0 38 86.8
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 2.2e-08 61.6 48 72.9
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 2.2e-08 61.6 48 72.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 2.2e-08 61.6 48 72.9
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 2.2e-08 61.6 48 72.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 2.2e-08 61.6 48 72.9
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 2.9e-08 61.2 48 70.8
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 3.7e-08 60.8 48 72.9
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 4.9e-08 60.5 48 70.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 72.9
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 72.9
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 6.4e-08 60.1 48 70.8
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.1e-07 59.3 48 70.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 1.4e-07 58.9 48 70.8
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.4e-07 58.9 48 68.8
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 1.4e-07 58.9 48 70.8
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 1.4e-07 58.9 48 70.8
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 1.4e-07 58.9 48 70.8
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 1.9e-07 58.5 48 68.8
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 1.9e-07 58.5 48 68.8
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.9e-07 58.5 48 68.8
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 70.8
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.4e-07 58.2 48 68.8
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 3.2e-07 57.8 48 68.8
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 68.8
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 68.8
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 4.1e-07 57.4 44 75.0
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 66.7
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 66.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 66.7
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 4.1e-07 57.4 50 66.0
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 4.1e-07 57.4 48 68.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 4.1e-07 57.4 49 67.3
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 5.4e-07 57.0 48 66.7
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 5.4e-07 57.0 48 66.7
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 5.4e-07 57.0 48 66.7
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 5.4e-07 57.0 48 68.8
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 7.0e-07 56.6 48 64.6
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 7.0e-07 56.6 48 66.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 9.2e-07 56.2 52 61.5
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 9.2e-07 56.2 52 61.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 9.2e-07 56.2 52 61.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 9.2e-07 56.2 48 66.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 9.2e-07 56.2 48 66.7
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.2e-07 56.2 48 64.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 66.7
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 66.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.2e-06 55.8 48 64.6
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 1.6e-06 55.5 48 62.5
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.1e-06 55.1 48 66.7
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 2.7e-06 54.7 48 66.7
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 2.7e-06 54.7 48 64.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.7e-06 54.7 48 64.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 2.7e-06 54.7 47 63.8
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 3.5e-06 54.3 48 62.5
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 3.5e-06 54.3 52 57.7
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 4.6e-06 53.9 48 64.6
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.0e-06 53.5 48 60.4
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 7.8e-06 53.1 48 64.6
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.8e-06 53.1 44 65.9


User provided reference genes

Program Settings