Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13300 Brassica carinata HOM05D000814 ORTHO05D027133 2.1e-80 302.4 162 100.0
BcaC03g13301 Brassica carinata HOM05D000814 ORTHO05D027133 2.1e-80 302.4 162 100.0
BolC2t06396H Brassica oleracea HOM05D000814 ORTHO05D027133 3.0e-74 282.0 163 95.1
C02p04320 Brassica napus HOM05D000814 ORTHO05D027133 3.1e-55 218.8 132 92.4
A06p45090 Brassica napus HOM05D000814 ORTHO05D005211 9.7e-41 170.6 143 71.3
BcaC06g34253 Brassica carinata HOM05D000814 ORTHO05D005211 6.3e-40 167.9 143 69.2
BraA06t27378Z Brassica rapa HOM05D000814 ORTHO05D005211 2.4e-39 166.0 143 69.9
C07p31060 Brassica napus HOM05D000814 ORTHO05D005211 4.1e-39 165.2 143 69.2
BolC7t43650H Brassica oleracea HOM05D000814 ORTHO05D005211 2.0e-38 162.9 103 86.4
Sp2g12150 Schrenkiella parvula HOM05D000814 ORTHO05D005211 5.9e-38 161.4 143 67.8
BcaC06g31387 Brassica carinata HOM05D000814 ORTHO05D005211 4.2e-36 155.2 144 67.4
AT5G47440 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 3.0e-34 149.1 144 62.5
AL8G10590 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 5.1e-34 148.3 139 63.3
Thhalv10000905m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 7.4e-33 144.4 144 63.2
CARHR173930 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.4e-31 140.2 102 76.5
Carub.0008s0034 Capsella rubella HOM05D000814 ORTHO05D005211 2.2e-29 132.9 145 57.9
Aa31sc265G40 Aethionema arabicum HOM05D000814 ORTHO05D005211 1.2e-27 127.1 99 74.7
Carub.0007s2406 Capsella rubella HOM05D000814 ORTHO05D005211 2.0e-25 119.8 102 70.6
AT4G17350 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 1.4e-23 113.6 102 68.6
Aa31LG6G90 Aethionema arabicum HOM05D000814 ORTHO05D005211 1.8e-23 113.2 106 67.0
AL7G37360 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 1.8e-23 113.2 102 69.6
CARHR223960 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.8e-23 113.2 102 68.6
C09p51970 Brassica napus HOM05D000001 ORTHO05D009726 3.5e-22 109.0 104 64.4
BcaC04g19754 Brassica carinata HOM05D000814 ORTHO05D093520 5.9e-22 108.2 69 84.1
BcaC06g33543 Brassica carinata HOM05D000814 ORTHO05D005211 2.2e-21 106.3 108 65.7
BcaNung03467 Brassica carinata HOM05D000814 ORTHO05D005211 2.2e-21 106.3 108 65.7
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 2.2e-21 106.3 108 65.7
Thhalv10025351m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 5.0e-21 105.1 145 53.1
THA.LOC104806665 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.9e-20 103.2 95 66.3
Sp7g16830 Schrenkiella parvula HOM05D000814 ORTHO05D005211 4.2e-20 102.1 103 66.0
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 5.5e-20 101.7 102 65.7
BcaNung00099 Brassica carinata HOM05D000814 ORTHO05D005211 1.6e-19 100.1 103 63.1
THA.LOC104812807 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.6e-19 100.1 97 63.9
BcaC09g50465 Brassica carinata HOM05D000814 ORTHO05D005211 6.1e-19 98.2 103 63.1
C01p25120 Brassica napus HOM05D000814 ORTHO05D005211 6.1e-19 98.2 103 63.1
BolC1t02464H Brassica oleracea HOM05D000814 ORTHO05D005211 6.1e-19 98.2 103 63.1
A01p20020 Brassica napus HOM05D000814 ORTHO05D005211 8.0e-19 97.8 103 63.1
VMungo0251G1629 Vigna mungo HOM05D000814 ORTHO05D005211 1.0e-18 97.4 144 47.2
C07p48710 Brassica napus HOM05D000814 ORTHO05D005211 1.4e-18 97.1 107 62.6
BraA01t01925Z Brassica rapa HOM05D000814 ORTHO05D005211 1.4e-18 97.1 103 63.1
Psat2g176920 Pisum sativum HOM05D000814 ORTHO05D005211 1.4e-18 97.1 108 54.6
Glyma.17G142900 Glycine max HOM05D000814 ORTHO05D005211 1.8e-18 96.7 146 48.6
Lj4g0027875 Lotus japonicus HOM05D000814 ORTHO05D005211 1.8e-18 96.7 103 58.3
MD06G1056800 Malus domestica HOM05D000814 ORTHO05D005211 1.8e-18 96.7 99 62.6
Prupe.5G067500 Prunus persica HOM05D000814 ORTHO05D005211 2.3e-18 96.3 99 60.6
Glyma.05G060600 Glycine max HOM05D000814 ORTHO05D005211 4.0e-18 95.5 144 48.6
TPR.G18142 Trifolium pratense HOM05D000814 ORTHO05D005211 4.0e-18 95.5 108 54.6
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 6.8e-18 94.7 102 61.8
Duzib068G1367 Durio zibethinus HOM05D000814 ORTHO05D005211 8.8e-18 94.4 101 58.4
Duzib084G0292 Durio zibethinus HOM05D000814 ORTHO05D005211 1.5e-17 93.6 102 57.8
Lalb_Chr16g0386761 Lupinus albus HOM05D000814 ORTHO05D005211 1.5e-17 93.6 148 46.6
Lj2A220T37 Lonicera japonica HOM05D000814 ORTHO05D005211 2.6e-17 92.8 95 58.9
Glyma.11G034400 Glycine max HOM05D000814 ORTHO05D005211 3.4e-17 92.4 96 57.3
Phvul.003G221700 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 3.4e-17 92.4 144 45.1
Thecc.03G249400 Theobroma cacao HOM05D000814 ORTHO05D005211 4.4e-17 92.0 101 56.4
Gohir.A03G007700 Gossypium hirsutum HOM05D000814 ORTHO05D005211 9.8e-17 90.9 110 56.4
Rhsim11G0023800 Rhododendron simsii HOM05D000814 ORTHO05D005211 9.8e-17 90.9 95 56.8
Hma1.2p1_1136F.1_g260500 Hydrangea macrophylla HOM05D000814 ORTHO05D005211 1.3e-16 90.5 95 57.9
arahy.Tifrunner.gnm1.ann1.2V173I Arachis hypogaea HOM05D000814 ORTHO05D005211 2.2e-16 89.7 94 56.4
arahy.Tifrunner.gnm1.ann1.EJ5RI6 Arachis hypogaea HOM05D000814 ORTHO05D005211 2.2e-16 89.7 94 56.4
Dinv39158 Davidia involucrata HOM05D000814 ORTHO05D005211 2.2e-16 89.7 95 55.8
Actinidia02142 Actinidia chinensis HOM05D000814 ORTHO05D005211 3.7e-16 89.0 133 48.1
Gorai.003G171900 Gossypium raimondii HOM05D000814 ORTHO05D005211 4.8e-16 88.6 110 55.5
Medtr5g012870 Medicago truncatula HOM05D000814 ORTHO05D005211 4.8e-16 88.6 143 44.8
VMungo1215G2706 Vigna mungo HOM05D000814 ORTHO05D005211 4.8e-16 88.6 96 55.2
COL.COLO4_37152 Corchorus olitorius HOM05D000814 ORTHO05D005211 6.3e-16 88.2 101 56.4
Cc08_g12270 Coffea canephora HOM05D000814 ORTHO05D005211 8.3e-16 87.8 139 41.0
Phvul.002G057300 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 8.3e-16 87.8 96 55.2
CiPaw.11G080500 Carya illinoinensis HOM05D000814 ORTHO05D005211 1.8e-15 86.7 95 52.6
CANSAT21G0925 Cannabis sativa HOM05D000814 ORTHO05D005211 3.1e-15 85.9 93 60.2
Gohir.D03G163300 Gossypium hirsutum HOM05D000814 ORTHO05D005211 3.1e-15 85.9 110 53.6
Sabra03G0048300 Salix brachista HOM05D000814 ORTHO05D005211 3.1e-15 85.9 100 52.0
Ah.12g054220 Amaranthus hybridus HOM05D000814 ORTHO05D005211 4.1e-15 85.5 113 52.2
Lj2g0025416 Lotus japonicus HOM05D000814 ORTHO05D005211 5.4e-15 85.1 101 52.5
RcHm_v2.0_Chr7g0203601 Rosa chinensis HOM05D000814 ORTHO05D005211 7.0e-15 84.7 101 53.5
Glyma.01G207900 Glycine max HOM05D000814 ORTHO05D005211 9.1e-15 84.3 96 53.1
Lalb_Chr16g0379521 Lupinus albus HOM05D000814 ORTHO05D005211 2.0e-14 83.2 98 52.0
Ciclev10020521m.g Citrus clementina HOM05D000814 ORTHO05D005211 2.7e-14 82.8 95 51.6
Nitab4.5_0002289g0060 Nicotiana tabacum HOM05D000814 ORTHO05D005211 2.7e-14 82.8 104 49.0
Ca_24587_v3 Cicer arietinum L. HOM05D000814 ORTHO05D005211 3.5e-14 82.4 143 46.9
FvH4_5g19120 Fragaria vesca HOM05D000814 ORTHO05D005211 3.5e-14 82.4 96 53.1
FAN13G2837 Fragaria x ananassa HOM05D000814 ORTHO05D005211 3.5e-14 82.4 98 52.0
FAN18G3684 Fragaria x ananassa HOM05D000814 ORTHO05D005211 3.5e-14 82.4 96 53.1
Nitab4.5_0001381g0180 Nicotiana tabacum HOM05D000814 ORTHO05D005211 3.5e-14 82.4 103 50.5
DCAR_004964 Daucus carota HOM05D000814 ORTHO05D005211 4.5e-14 82.0 128 43.8
AL7G38080 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 5.9e-14 81.6 95 49.5
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 5.9e-14 81.6 121 44.6
ClCG01G004130 Citrullus lanatus HOM05D000814 ORTHO05D005211 7.7e-14 81.3 95 55.8
FAN04G0530 Fragaria x ananassa HOM05D000814 ORTHO05D005211 7.7e-14 81.3 96 52.1
vmacro00194 Vaccinium macrocarpon HOM05D000814 ORTHO05D005211 7.7e-14 81.3 95 54.7
arahy.Tifrunner.gnm1.ann1.L8S3TD Arachis hypogaea HOM05D000814 ORTHO05D005211 1.0e-13 80.9 103 50.5
EL10Ac5g12380 Beta vulgaris HOM05D000814 ORTHO05D005211 1.0e-13 80.9 109 49.5
AUR62007101 Chenopodium quinoa HOM05D000814 ORTHO05D005211 1.3e-13 80.5 101 49.5
arahy.Tifrunner.gnm1.ann1.3524WN Arachis hypogaea HOM05D000814 ORTHO05D005211 1.7e-13 80.1 103 50.5
AT4G16670 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 2.2e-13 79.7 95 49.5
Atru.chr9.1292 Acer truncatum HOM05D000814 ORTHO05D005211 2.9e-13 79.3 95 52.6
PGR031G1372 Punica granatum HOM05D000814 ORTHO05D005211 3.8e-13 79.0 97 51.5
Oeu020435.1 Olea europaea HOM05D000814 ORTHO05D005211 6.5e-13 78.2 133 38.3
Aqoxy5G03851 Aquilegia oxysepala HOM05D000814 ORTHO05D005211 8.5e-13 77.8 103 46.6
CARHR223190 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.5e-12 77.0 101 45.5
Nn6g33916 Nelumbo nucifera HOM05D000814 ORTHO05D005211 1.5e-12 77.0 103 50.5
BcaNung02854 Brassica carinata HOM05D000814 ORTHO05D005211 1.9e-12 76.6 95 46.3
Hund11603 Selenicereus undatus HOM05D000814 ORTHO05D005211 2.5e-12 76.3 141 37.6
SalBow6G5366 Salvia bowleyana HOM05D000814 ORTHO05D005211 4.2e-12 75.5 103 45.6
arahy.Tifrunner.gnm1.ann1.WZA0WP Arachis hypogaea HOM05D000814 ORTHO05D005211 5.5e-12 75.1 103 48.5
CAN.G1058.47 Capsicum annuum HOM05D000814 ORTHO05D005211 7.2e-12 74.7 131 41.2
Peaxi162Scf00209g00017 Petunia axillaris HOM05D000814 ORTHO05D005211 7.2e-12 74.7 135 38.5
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 7.2e-12 74.7 129 42.6
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 9.5e-12 74.3 98 51.0
Gohir.D08G187600 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.2e-11 73.9 104 48.1
Gorai.004G197300 Gossypium raimondii HOM05D000814 ORTHO05D005211 1.2e-11 73.9 104 48.1
Manes.02G040900 Manihot esculenta HOM05D000814 ORTHO05D005211 3.6e-11 72.4 105 45.7
Potri.001G156700 Populus trichocarpa HOM05D000814 ORTHO05D005211 3.6e-11 72.4 95 51.6
Aa31LG2G12860 Aethionema arabicum HOM05D000814 ORTHO05D005211 4.7e-11 72.0 95 49.5
Potri.003G077900 Populus trichocarpa HOM05D000814 ORTHO05D005211 4.7e-11 72.0 98 46.9
Thhalv10025212m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 6.1e-11 71.6 95 46.3
Sed0021303 Sechium edule HOM05D000814 ORTHO05D005211 8.0e-11 71.2 95 49.5
Solyc08g078500.3 Solanum lycopersicum HOM05D000814 ORTHO05D005211 1.0e-10 70.9 103 46.6
Carub.0007s2473 Capsella rubella HOM05D000814 ORTHO05D005211 1.8e-10 70.1 98 49.0
CsaV3_5G004300 Cucumis sativus L. HOM05D000814 ORTHO05D005211 2.3e-10 69.7 95 50.5
Migut.A01115 Erythranthe guttata HOM05D000814 ORTHO05D005211 2.3e-10 69.7 98 48.0
Sed0013197 Sechium edule HOM05D000814 ORTHO05D005211 3.0e-10 69.3 95 49.5
MELO3C005525.2 Cucumis melo HOM05D000814 ORTHO05D005211 4.0e-10 68.9 80 55.0
PSO063G2296 Papaver somniferum HOM05D000814 ORTHO05D005211 4.0e-10 68.9 95 46.3
PSO782G1197 Papaver somniferum HOM05D000814 ORTHO05D005211 4.0e-10 68.9 95 46.3
Sabra01G0134500 Salix brachista HOM05D000814 ORTHO05D005211 5.2e-10 68.6 100 46.0
Sp7g15280 Schrenkiella parvula HOM05D000814 ORTHO05D005211 1.2e-09 67.4 141 37.6
Duzib205G0663 Durio zibethinus HOM05D000814 ORTHO05D005211 1.5e-09 67.0 101 46.5
ECA233G5265 Erigeron canadensis HOM05D000814 ORTHO05D005211 1.5e-09 67.0 133 39.8
Gohir.A08G169200 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.5e-09 67.0 104 46.2
SGA_v2.0_scaffold104G30168 Striga asiatica HOM05D000814 ORTHO05D005211 1.5e-09 67.0 84 53.6
BcaNung00163 Brassica carinata HOM05D000814 ORTHO05D005211 3.4e-09 65.9 106 42.5
Cfa012735 Carpinus fangiana HOM05D000814 ORTHO05D005211 3.4e-09 65.9 95 46.3
arahy.Tifrunner.gnm1.ann1.E6X463 Arachis hypogaea HOM05D000814 ORTHO05D005211 4.4e-09 65.5 101 42.6
QL12p011702 Quercus lobata HOM05D000814 ORTHO05D005211 5.7e-09 65.1 114 42.1
BcaC09g50397 Brassica carinata HOM05D000814 ORTHO05D005211 9.8e-09 64.3 103 44.7
C01p25970 Brassica napus HOM05D000814 ORTHO05D005211 9.8e-09 64.3 103 44.7
BolC1t02542H Brassica oleracea HOM05D000814 ORTHO05D005211 9.8e-09 64.3 103 44.7
A01p20830 Brassica napus HOM05D000814 ORTHO05D005211 2.2e-08 63.2 97 45.4
BraA01t01990Z Brassica rapa HOM05D000814 ORTHO05D005211 2.2e-08 63.2 97 45.4
HanXRQChr17g0549341 Helianthus annuus HOM05D000814 ORTHO05D005211 2.2e-08 63.2 105 44.8
BolC9t58059H Brassica oleracea HOM05D000001 ORTHO05D009726 1.4e-07 60.5 47 74.5
Sopen08g026980 Solanum pennellii HOM05D000814 ORTHO05D005211 1.4e-07 60.5 103 41.7
PGSC0003DMG400004767 Solanum tuberosum HOM05D000814 ORTHO05D005211 1.8e-07 60.1 103 41.7
AUR62019964 Chenopodium quinoa HOM05D000814 ORTHO05D005211 2.4e-07 59.7 62 61.3
Manes.01G081800 Manihot esculenta HOM05D000814 ORTHO05D005211 2.4e-07 59.7 105 41.0
HPP92_007437 Vanilla planifolia HOM05D000814 ORTHO05D005211 4.1e-07 58.9 80 47.5
Ah.09g229510 Amaranthus hybridus HOM05D005858 ORTHO05D006982 1.2e-06 57.4 146 32.9
Hund26407 Selenicereus undatus HOM05D005858 ORTHO05D006982 1.2e-06 57.4 133 34.6
MBI14_g08081_MAGBIO Magnolia biondii HOM05D005858 ORTHO05D006982 1.6e-06 57.0 70 45.7
EL10Ac8g18869 Beta vulgaris HOM05D005858 ORTHO05D006982 2.0e-06 56.6 146 31.5
Sc01g0008350 Simmondsia chinensis HOM05D000814 ORTHO05D005211 2.0e-06 56.6 99 40.4
AUR62039752 Chenopodium quinoa HOM05D005858 ORTHO05D006982 5.9e-06 55.1 145 33.8
Actinidia14417 Actinidia chinensis HOM05D000814 ORTHO05D005211 7.7e-06 54.7 62 56.5
A02p14810 Brassica napus HOM05D000082 ORTHO05D000038 7.7e-06 54.7 29 93.1
A06p26670 Brassica napus HOM05D001130 ORTHO05D023954 7.7e-06 54.7 29 93.1
C05p40260 Brassica napus HOM05D024465 ORTHO05D027048 7.7e-06 54.7 29 96.6
BolC5t32768H Brassica oleracea HOM05D024465 ORTHO05D027048 7.7e-06 54.7 29 96.6
Ca_21182_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 7.7e-06 54.7 111 33.3
Os10g0560000 Oryza sativa ssp. japonica HOM05D000814 ORTHO05D005211 7.7e-06 54.7 147 32.7


User provided reference genes

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