Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13280 Brassica carinata HOM05D000111 ORTHO05D007071 6.7e-47 190.3 92 100.0
A02p00190 Brassica napus HOM05D000111 ORTHO05D007071 6.7e-47 190.3 92 100.0
C02p04110 Brassica napus HOM05D000111 ORTHO05D007071 6.7e-47 190.3 92 100.0
BraA02t05003Z Brassica rapa HOM05D000111 ORTHO05D007071 6.7e-47 190.3 92 100.0
BcaB05g21525 Brassica carinata HOM05D000111 ORTHO05D007071 2.2e-34 148.7 92 82.6
BcaB05g21526 Brassica carinata HOM05D000111 ORTHO05D007071 3.6e-32 141.4 96 74.0
C02p04100 Brassica napus HOM05D000111 ORTHO05D007071 3.3e-30 134.8 96 69.8
BolC2t06373H Brassica oleracea HOM05D000111 ORTHO05D007071 9.7e-30 133.3 96 68.8
Thhalv10015383m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 3.7e-29 131.3 95 69.5
Thhalv10015562m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 1.4e-28 129.4 95 67.4
Sp6g31960 Schrenkiella parvula HOM05D000111 ORTHO05D007071 1.4e-28 129.4 92 69.6
BcaC04g19202 Brassica carinata HOM05D000111 ORTHO05D007071 3.1e-28 128.3 99 65.7
A10p26050 Brassica napus HOM05D000111 ORTHO05D007071 3.1e-28 128.3 99 65.7
BolC9t59342H Brassica oleracea HOM05D000111 ORTHO05D007071 3.1e-28 128.3 99 65.7
BraA10t44665Z Brassica rapa HOM05D000111 ORTHO05D007071 3.1e-28 128.3 99 65.7
BcaC04g19204 Brassica carinata HOM05D000111 ORTHO05D007071 1.2e-27 126.3 95 66.3
C09p65110 Brassica napus HOM05D000111 ORTHO05D007071 1.2e-27 126.3 95 66.3
BolC9t59340H Brassica oleracea HOM05D000111 ORTHO05D007071 1.2e-27 126.3 95 66.3
C09p65130 Brassica napus HOM05D000111 ORTHO05D007071 3.8e-26 121.3 95 64.2
CARHR201560 Cardamine hirsuta HOM05D000111 ORTHO05D007071 6.5e-26 120.6 94 62.8
Carub.0006s0373 Capsella rubella HOM05D000111 ORTHO05D007071 3.2e-25 118.2 92 66.3
A10p13170 Brassica napus HOM05D000111 ORTHO05D007071 1.6e-24 115.9 95 62.1
C03p05860 Brassica napus HOM05D000111 ORTHO05D007071 1.6e-24 115.9 95 62.1
C03p05890 Brassica napus HOM05D000111 ORTHO05D007071 1.6e-24 115.9 95 62.1
BolC3t13098H Brassica oleracea HOM05D000111 ORTHO05D007071 1.6e-24 115.9 95 62.1
BraA10t43414Z Brassica rapa HOM05D000111 ORTHO05D007071 1.6e-24 115.9 95 62.1
AL6G14730 Arabidopsis lyrata HOM05D000111 ORTHO05D007071 2.1e-24 115.5 92 64.1
AT5G05030 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 8.0e-24 113.6 93 64.5
BcaB01g05471 Brassica carinata HOM05D000111 ORTHO05D007071 8.0e-24 113.6 95 61.1
CARHR208240 Cardamine hirsuta HOM05D000111 ORTHO05D007071 8.0e-24 113.6 92 64.1
AT5G04937 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 1.0e-23 113.2 92 62.0
AT5G11660 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 1.4e-23 112.8 94 61.7
BcaC04g19205 Brassica carinata HOM05D000111 ORTHO05D007071 1.8e-23 112.5 92 64.1
BolC9t59343H Brassica oleracea HOM05D000111 ORTHO05D007071 1.8e-23 112.5 92 64.1
BcaC04g19203 Brassica carinata HOM05D000111 ORTHO05D007071 4.0e-23 111.3 99 62.6
A10p26070 Brassica napus HOM05D000111 ORTHO05D007071 5.2e-23 110.9 92 63.0
BraA10t44667Z Brassica rapa HOM05D000111 ORTHO05D007071 5.2e-23 110.9 92 63.0
BolC9t59345H Brassica oleracea HOM05D000111 ORTHO05D007071 6.8e-23 110.5 92 64.1
BcaB06g26022 Brassica carinata HOM05D000111 ORTHO05D007071 3.4e-22 108.2 92 62.0
C09p65160 Brassica napus HOM05D000111 ORTHO05D007071 7.5e-22 107.1 92 62.0
Sp6g39360 Schrenkiella parvula HOM05D000111 ORTHO05D007071 7.5e-22 107.1 91 62.6
Carub.0006s0397 Capsella rubella HOM05D000111 ORTHO05D007071 3.7e-21 104.8 92 57.6
Thhalv10015555m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 1.4e-20 102.8 95 54.7
CARHR208130 Cardamine hirsuta HOM05D000111 ORTHO05D007071 3.1e-20 101.7 92 57.6
AL6G37170 Arabidopsis lyrata HOM05D000111 ORTHO05D007071 1.2e-19 99.8 92 53.3
BolC2t12026H Brassica oleracea HOM05D000111 ORTHO05D007071 2.0e-19 99.0 97 51.5
C02p59640 Brassica napus HOM05D000111 ORTHO05D007071 3.5e-19 98.2 97 51.5
C08p43180 Brassica napus HOM05D000111 ORTHO05D007071 5.9e-19 97.4 97 51.5
Carub.0006s0122 Capsella rubella HOM05D000111 ORTHO05D007071 1.0e-18 96.7 96 56.2
C04p14820 Brassica napus HOM05D000111 ORTHO05D007071 1.3e-18 96.3 97 49.5
BolC4t23056H Brassica oleracea HOM05D000111 ORTHO05D007071 1.3e-18 96.3 97 49.5
BolC8t51872H Brassica oleracea HOM05D000111 ORTHO05D007071 1.3e-18 96.3 97 50.5
BraSC56t46395Z Brassica rapa HOM05D000111 ORTHO05D007071 1.3e-18 96.3 97 49.5
BcaB07g31046 Brassica carinata HOM05D000111 ORTHO05D007071 1.7e-18 95.9 97 46.4
Thhalv10005654m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 2.2e-18 95.5 94 52.1
CARHR187530 Cardamine hirsuta HOM05D000111 ORTHO05D007071 3.8e-18 94.7 97 49.5
A03p02170 Brassica napus HOM05D000111 ORTHO05D007071 5.0e-18 94.4 94 54.3
BcaC04g22060 Brassica carinata HOM05D000111 ORTHO05D007071 6.5e-18 94.0 97 48.5
C09p23960 Brassica napus HOM05D000111 ORTHO05D007071 6.5e-18 94.0 97 48.5
AT5G60380 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 1.1e-17 93.2 97 50.5
CARHR187930 Cardamine hirsuta HOM05D000111 ORTHO05D007071 2.5e-17 92.0 96 49.0
CARHR208220 Cardamine hirsuta HOM05D000111 ORTHO05D007071 2.5e-17 92.0 92 54.3
BcaB01g05727 Brassica carinata HOM05D000111 ORTHO05D007071 4.2e-17 91.3 94 53.2
BcaB01g05935 Brassica carinata HOM05D000111 ORTHO05D007071 4.2e-17 91.3 94 53.2
C03p02480 Brassica napus HOM05D000111 ORTHO05D007071 4.2e-17 91.3 94 53.2
BolC3t12799H Brassica oleracea HOM05D000111 ORTHO05D007071 4.2e-17 91.3 94 53.2
Carub.0002s1096 Capsella rubella HOM05D000111 ORTHO05D007071 7.2e-17 90.5 92 50.0
Sp1g31170 Schrenkiella parvula HOM05D000111 ORTHO05D007071 7.2e-17 90.5 96 47.9
BcaC03g17890 Brassica carinata HOM05D000111 ORTHO05D007071 1.2e-16 89.7 97 51.5
C02p59300 Brassica napus HOM05D000111 ORTHO05D007071 1.2e-16 89.7 97 51.5
BolC2t11994H Brassica oleracea HOM05D000111 ORTHO05D007071 1.2e-16 89.7 97 51.5
AT5G25410 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 1.6e-16 89.4 92 48.9
C02p59920 Brassica napus HOM05D000111 ORTHO05D007071 2.8e-16 88.6 97 47.4
CARHR188130 Cardamine hirsuta HOM05D000111 ORTHO05D007071 2.8e-16 88.6 97 48.5
BcaB07g29928 Brassica carinata HOM05D000111 ORTHO05D007071 6.1e-16 87.4 97 47.4
A02p39570 Brassica napus HOM05D000111 ORTHO05D007071 6.1e-16 87.4 97 50.5
Carub.0008s0170 Capsella rubella HOM05D000111 ORTHO05D007071 6.1e-16 87.4 97 48.5
A02p40020 Brassica napus HOM05D000111 ORTHO05D007071 8.0e-16 87.0 97 46.4
BraA02t08966Z Brassica rapa HOM05D000111 ORTHO05D007071 8.0e-16 87.0 97 46.4
AL8G36990 Arabidopsis lyrata HOM05D000111 ORTHO05D007071 1.0e-15 86.7 97 49.5
BcaC03g17936 Brassica carinata HOM05D000111 ORTHO05D007071 1.0e-15 86.7 97 46.4
BcaNung06149 Brassica carinata HOM05D000111 ORTHO05D007071 2.3e-15 85.5 97 46.4
BcaC02g11490 Brassica carinata HOM05D000111 ORTHO05D007071 3.0e-15 85.1 89 46.1
CARHR274050 Cardamine hirsuta HOM05D000111 ORTHO05D007071 4.0e-15 84.7 97 44.3
BcaB06g29393 Brassica carinata HOM05D000111 ORTHO05D007071 5.2e-15 84.3 98 48.0
BraA02t08925Z Brassica rapa HOM05D000111 ORTHO05D007071 8.8e-15 83.6 97 49.5
AT5G25415 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 1.2e-14 83.2 93 46.2
Sp2g22120 Schrenkiella parvula HOM05D000111 ORTHO05D007071 1.2e-14 83.2 97 46.4
Sp1g31050 Schrenkiella parvula HOM05D000111 ORTHO05D007071 2.0e-14 82.4 96 45.8
CARHR130790 Cardamine hirsuta HOM05D000111 ORTHO05D007071 3.4e-14 81.6 97 47.4
Thhalv10005486m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 4.4e-14 81.3 94 44.7
Thhalv10028179m.g Eutrema salsugineum HOM05D000111 ORTHO05D007071 7.5e-14 80.5 96 45.8
THA.LOC104815145 Tarenaya hassleriana HOM05D000111 ORTHO05D007071 7.5e-14 80.5 94 44.7
BcaB07g29978 Brassica carinata HOM05D000111 ORTHO05D007071 1.7e-13 79.3 98 44.9
Carub.0008s2108 Capsella rubella HOM05D000111 ORTHO05D007071 1.7e-13 79.3 98 48.0
A02p39580 Brassica napus HOM05D000111 ORTHO05D007071 2.8e-13 78.6 98 44.9
BraA02t08926Z Brassica rapa HOM05D000111 ORTHO05D007071 2.8e-13 78.6 98 44.9
A02p39550 Brassica napus HOM05D000111 ORTHO05D007071 4.9e-13 77.8 98 45.9
BcaB07g29979 Brassica carinata HOM05D000111 ORTHO05D007071 6.3e-13 77.4 98 44.9
THA.LOC104815014 Tarenaya hassleriana HOM05D000111 ORTHO05D007071 5.4e-12 74.3 95 41.1
Carub.0007s3200 Capsella rubella HOM05D000111 ORTHO05D007071 9.2e-12 73.6 92 43.5
Ca_15263_v3 Cicer arietinum L. HOM05D000111 ORTHO05D001475 1.7e-10 69.3 90 43.3
CARHR188270 Cardamine hirsuta HOM05D000111 ORTHO05D007071 2.9e-10 68.6 89 43.8
BcaC03g16997 Brassica carinata HOM05D000111 ORTHO05D007071 2.5e-09 65.5 96 38.5
C02p48940 Brassica napus HOM05D000111 ORTHO05D007071 2.5e-09 65.5 96 38.5
BcaC03g17891 Brassica carinata HOM05D038683 ORTHO05D018738 3.3e-09 65.1 76 48.7
Carub.0007s3199 Capsella rubella HOM05D000111 ORTHO05D007071 3.3e-09 65.1 94 38.3
TPR.G32708 Trifolium pratense HOM05D000111 ORTHO05D001475 3.3e-09 65.1 90 38.9
BraA02t08163Z Brassica rapa HOM05D000111 ORTHO05D007071 4.3e-09 64.7 96 38.5
BcaC04g19206 Brassica carinata HOM05D000286 ORTHO05D000170 7.3e-09 63.9 38 78.9
AL6G37160 Arabidopsis lyrata HOM05D000111 ORTHO05D007071 9.5e-09 63.5 67 46.3
AL4G31290 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 4.7e-08 61.2 88 38.6
AT5G36680 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 6.1e-08 60.8 92 39.1
AT5G36770 Arabidopsis thaliana HOM05D000111 ORTHO05D007071 6.1e-08 60.8 92 39.1
Medtr8g104480 Medicago truncatula HOM05D000111 ORTHO05D001475 8.0e-08 60.5 90 38.9
Lj4g0027164 Lotus japonicus HOM05D000111 ORTHO05D001475 1.0e-07 60.1 90 41.1
Psat6g082880 Pisum sativum HOM05D000111 ORTHO05D001475 1.4e-07 59.7 90 36.7
Psat7g011320 Pisum sativum HOM05D000111 ORTHO05D001475 1.4e-07 59.7 90 35.6
Psat7g029800 Pisum sativum HOM05D000111 ORTHO05D001475 1.4e-07 59.7 90 36.7
Aqoxy7G01248 Aquilegia oxysepala HOM05D000111 ORTHO05D007071 1.8e-07 59.3 101 33.7
CARHR129410 Cardamine hirsuta HOM05D000111 ORTHO05D001475 1.8e-07 59.3 86 37.2
Medtr2g046430 Medicago truncatula HOM05D000111 ORTHO05D001475 1.8e-07 59.3 90 37.8
Thhalv10017910m.g Eutrema salsugineum HOM05D000111 ORTHO05D001475 2.3e-07 58.9 83 41.0
Medtr2g046520 Medicago truncatula HOM05D000111 ORTHO05D001475 3.0e-07 58.5 90 37.8
AL4G31280 Arabidopsis lyrata HOM05D000603 ORTHO05D003510 4.0e-07 58.2 84 41.7
Cpa.g.sc62.65 Carica papaya HOM05D000111 ORTHO05D007071 5.2e-07 57.8 93 39.8
Psat7g011560 Pisum sativum HOM05D000111 ORTHO05D001475 5.2e-07 57.8 90 35.6
TPR.G32715 Trifolium pratense HOM05D000111 ORTHO05D001475 6.8e-07 57.4 88 36.4
Psat7g003360 Pisum sativum HOM05D000111 ORTHO05D001475 1.2e-06 56.6 89 41.6
Psat7g004880 Pisum sativum HOM05D000111 ORTHO05D001475 1.2e-06 56.6 88 40.9
Psat7g010080 Pisum sativum HOM05D000111 ORTHO05D001475 1.2e-06 56.6 90 35.6
THA.LOC104815146 Tarenaya hassleriana HOM05D000111 ORTHO05D007071 1.2e-06 56.6 87 37.9
COL.COLO4_15587 Corchorus olitorius HOM05D000111 ORTHO05D001475 1.5e-06 56.2 88 34.1
Aqoxy2G01306 Aquilegia oxysepala HOM05D000111 ORTHO05D001475 2.0e-06 55.8 94 38.3
A02p31610 Brassica napus HOM05D002336 ORTHO05D002526 2.0e-06 55.8 89 37.1
Sp4g17470 Schrenkiella parvula HOM05D000111 ORTHO05D001475 2.0e-06 55.8 83 38.6
AT2G35250 Arabidopsis thaliana HOM05D000111 ORTHO05D001475 2.6e-06 55.5 85 38.8
Psat0s2821g0040 Pisum sativum HOM05D000111 ORTHO05D001475 2.6e-06 55.5 87 39.1
Psat7g003520 Pisum sativum HOM05D000111 ORTHO05D001475 2.6e-06 55.5 87 37.9
Carub.0187s0001 Capsella rubella HOM05D000111 ORTHO05D001475 3.4e-06 55.1 81 37.0
Carub.0004s2038 Capsella rubella HOM05D000111 ORTHO05D001475 4.4e-06 54.7 81 34.6
Psat7g004280 Pisum sativum HOM05D000111 ORTHO05D001475 4.4e-06 54.7 84 44.0
Psat7g011160 Pisum sativum HOM05D000111 ORTHO05D001475 5.7e-06 54.3 90 35.6
TAR636G1607 Trochodendron aralioides HOM05D000111 ORTHO05D001475 5.7e-06 54.3 86 33.7
AL4G35450 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 9.8e-06 53.5 81 38.3
AL4G35480 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 9.8e-06 53.5 81 38.3
BcaC01g05525 Brassica carinata HOM05D000111 ORTHO05D001475 9.8e-06 53.5 81 37.0
BolC2t10989H Brassica oleracea HOM05D000111 ORTHO05D007071 9.8e-06 53.5 78 37.2
Carub.0004s0763 Capsella rubella HOM05D000111 ORTHO05D001475 9.8e-06 53.5 87 36.8
Carub.0004s0868 Capsella rubella HOM05D000111 ORTHO05D001475 9.8e-06 53.5 83 36.1
COL.COLO4_03707 Corchorus olitorius HOM05D000111 ORTHO05D001475 9.8e-06 53.5 88 31.8
Duzib068G1145 Durio zibethinus HOM05D000111 ORTHO05D001475 9.8e-06 53.5 82 36.6


User provided reference genes

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