Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 3.5e-154 548.9 438 100.0
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 3.5e-154 548.9 438 100.0
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 3.7e-87 326.2 523 66.9
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-83 314.3 520 68.8
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-81 306.2 548 66.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 8.1e-66 255.4 591 59.9
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.1e-59 235.0 595 58.8
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.5e-56 224.6 582 57.6
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.3e-51 206.8 559 59.0
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.4e-49 200.7 545 57.2
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.0e-36 157.1 599 50.8
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.1e-33 147.1 587 50.4
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 7.6e-32 142.5 575 53.2
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 2.9e-31 140.6 557 54.0
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 2.5e-30 137.5 557 53.9
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 4.2e-30 136.7 552 52.9
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 4.2e-30 136.7 552 52.9
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.7e-29 134.0 598 52.2
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 2.7e-29 134.0 590 52.5
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.1e-29 132.9 593 52.6
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.0e-28 132.1 585 52.3
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.3e-28 131.7 560 53.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.3e-27 127.1 588 52.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 7.4e-27 125.9 623 50.9
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.6e-26 124.8 586 51.0
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 4.8e-26 123.2 557 53.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 4.8e-26 123.2 565 52.9
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 4.8e-26 123.2 565 52.9
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 3.2e-22 110.5 562 52.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 6.1e-21 106.3 614 47.6
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.3e-20 104.4 533 53.1
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 3.9e-20 103.6 533 52.9
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.6e-16 90.9 611 46.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 3.4e-16 90.5 614 45.8
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.3e-15 88.6 602 46.5
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.7e-15 88.2 208 37.0
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.9e-15 87.4 113 51.3
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 5.0e-15 86.7 597 46.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.1e-14 85.5 604 44.5
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.4e-14 85.1 597 46.4
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 4.2e-14 83.6 609 46.0
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 5.5e-14 83.2 168 37.5
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 5.5e-14 83.2 607 44.5
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 7.2e-14 82.8 611 45.3
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 1.2e-13 82.0 156 42.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.2e-13 82.0 597 44.2
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.2e-13 82.0 625 45.1
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.6e-13 81.6 161 39.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.7e-13 80.9 614 44.6
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 2.7e-13 80.9 609 43.8
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.6e-13 80.5 596 48.8
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 4.7e-13 80.1 622 43.7
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.9e-13 79.3 193 36.3
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 7.9e-13 79.3 623 44.3
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.0e-12 79.0 635 44.4
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 1.0e-12 79.0 202 37.1
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.0e-12 79.0 195 33.8
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.4e-12 78.6 610 43.9
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.4e-12 78.6 168 39.9
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.8e-12 78.2 611 44.2
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.8e-12 78.2 620 46.3
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.8e-12 78.2 201 35.3
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.3e-12 77.8 231 34.2
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.3e-12 77.8 622 44.1
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.0e-12 77.4 586 45.6
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.0e-12 77.4 211 34.6
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 3.0e-12 77.4 204 35.8
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.0e-12 77.4 210 36.2
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 3.9e-12 77.0 213 32.9
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.9e-12 77.0 232 34.1
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.9e-12 77.0 627 45.1
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 5.1e-12 76.6 588 45.4
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 6.7e-12 76.3 610 44.8
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 6.7e-12 76.3 587 45.3
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.7e-12 76.3 186 36.0
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 8.8e-12 75.9 219 32.9
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 8.8e-12 75.9 211 34.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 8.8e-12 75.9 216 35.2
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.1e-11 75.5 317 58.7
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 1.1e-11 75.5 216 34.7
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.1e-11 75.5 613 44.4
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.5e-11 75.1 217 34.6
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.0e-11 74.7 603 44.6
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.6e-11 74.3 233 32.6
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.6e-11 74.3 233 32.6
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.3e-11 73.9 210 32.9
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.4e-11 73.6 121 47.1
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.7e-11 73.2 204 33.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.7e-11 73.2 204 33.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 5.7e-11 73.2 582 45.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 5.7e-11 73.2 412 53.6
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 7.4e-11 72.8 530 48.5
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 9.7e-11 72.4 144 40.3
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 9.7e-11 72.4 144 40.3
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 9.7e-11 72.4 164 36.0
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.3e-10 72.0 581 45.8
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.3e-10 72.0 213 32.9
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.3e-10 72.0 235 31.1
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-10 72.0 622 45.8
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 2.2e-10 71.2 194 33.0
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.2e-10 71.2 230 29.6
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.7e-10 70.5 227 33.5
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.7e-10 70.5 227 33.5
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.7e-10 70.5 211 30.8
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.8e-10 70.1 104 49.0
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.1e-09 68.9 198 34.3
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.1e-09 68.9 215 32.1
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.8e-09 68.2 142 43.0
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 2.4e-09 67.8 186 34.4
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.1e-09 67.0 217 32.3
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 5.3e-09 66.6 202 32.7
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 5.3e-09 66.6 585 44.8
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 5.3e-09 66.6 221 33.0
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 5.3e-09 66.6 217 29.0
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 5.3e-09 66.6 190 31.1
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 7.0e-09 66.2 217 32.3
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 7.0e-09 66.2 146 46.6
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 7.0e-09 66.2 602 43.9
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 9.1e-09 65.9 167 37.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.2e-08 65.5 225 31.6
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.2e-08 65.5 205 30.7
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-08 65.5 215 30.2
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.2e-08 65.5 604 45.9
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.6e-08 65.1 202 30.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.6e-08 65.1 168 33.3
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.0e-08 64.7 202 31.2
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.5e-08 63.9 595 44.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 4.5e-08 63.5 116 40.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 5.9e-08 63.2 204 32.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 7.7e-08 62.8 245 28.2
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 7.7e-08 62.8 148 42.6
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 7.7e-08 62.8 148 42.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.0e-07 62.4 182 33.5
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.0e-07 62.4 601 42.8
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.0e-07 62.4 124 40.3
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.3e-07 62.0 238 27.3
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.7e-07 61.6 204 33.3
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.7e-07 61.6 134 38.8
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.9e-07 60.8 200 31.5
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.9e-07 60.8 148 41.2
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 3.8e-07 60.5 192 31.2
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.0e-07 60.1 157 36.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.0e-07 60.1 212 28.8
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.0e-07 60.1 212 28.8
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 8.5e-07 59.3 618 44.2
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.5e-06 58.5 195 30.3
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 1.9e-06 58.2 193 30.6
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 3.2e-06 57.4 173 31.2
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 3.2e-06 57.4 208 27.9
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 9.4e-06 55.8 113 42.5
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 9.4e-06 55.8 595 44.5
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 9.4e-06 55.8 199 29.6


User provided reference genes

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