Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 8.6e-31 136.3 69 100.0
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.5e-30 135.6 69 98.6
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-30 135.2 69 98.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.9e-30 135.2 69 98.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.5e-30 134.8 69 98.6
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 97.1
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 97.1
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.3e-30 134.4 69 98.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 4.3e-30 134.0 69 97.1
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 4.3e-30 134.0 69 97.1
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 4.3e-30 134.0 69 97.1
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 4.3e-30 134.0 69 97.1
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 4.3e-30 134.0 69 97.1
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.6e-30 133.7 68 97.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 7.3e-30 133.3 69 95.7
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 7.3e-30 133.3 68 97.1
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 7.3e-30 133.3 68 97.1
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.3e-30 133.3 69 97.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 7.3e-30 133.3 69 95.7
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 7.3e-30 133.3 68 95.6
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 7.3e-30 133.3 69 95.7
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 9.5e-30 132.9 69 95.7
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.2e-29 132.5 68 97.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.2e-29 132.5 68 97.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.2e-29 132.5 68 97.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 94.2
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 95.7
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 94.2
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 95.7
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 95.7
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 95.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.1e-29 131.7 68 97.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 95.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.1e-29 131.7 68 97.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.1e-29 131.7 68 97.1
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.1e-29 131.7 68 97.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 2.1e-29 131.7 68 97.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.1e-29 131.7 69 94.2
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 2.8e-29 131.3 69 94.2
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.8e-29 131.3 69 95.7
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.6e-29 131.0 69 92.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.6e-29 131.0 69 94.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.6e-29 131.0 68 94.1
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.6e-29 131.0 68 94.1
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 3.6e-29 131.0 68 95.6
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 3.6e-29 131.0 68 95.6
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.6e-29 131.0 68 94.1
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 4.7e-29 130.6 69 94.2
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.7e-29 130.6 69 92.8
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 4.7e-29 130.6 69 92.8
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.7e-29 130.6 69 92.8
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 4.7e-29 130.6 68 95.6
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 6.2e-29 130.2 69 92.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.2e-29 130.2 68 94.1
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 6.2e-29 130.2 69 92.8
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 6.2e-29 130.2 69 94.2
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 8.1e-29 129.8 68 91.2
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 8.1e-29 129.8 68 91.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 8.1e-29 129.8 68 94.1
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 8.1e-29 129.8 69 94.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.1e-28 129.4 69 92.8
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.1e-28 129.4 69 92.8
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.1e-28 129.4 69 94.2
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.4e-28 129.0 68 91.2
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.4e-28 129.0 68 91.2
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 91.3
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.4e-28 129.0 68 94.1
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.4e-28 129.0 68 94.1
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.4e-28 129.0 69 92.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.8e-28 128.6 68 94.1
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.8e-28 128.6 68 94.1
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.1e-28 127.9 69 92.8
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 4.0e-28 127.5 68 89.7
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 4.0e-28 127.5 68 89.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 4.0e-28 127.5 69 91.3
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 5.2e-28 127.1 69 91.3
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 5.2e-28 127.1 68 94.1
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 8.9e-28 126.3 68 92.6
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-27 125.9 66 93.9
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.2e-27 125.9 67 92.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.2e-27 125.9 63 98.4
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.0e-27 125.2 68 91.2
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.0e-27 125.2 62 98.4
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 2.0e-27 125.2 68 91.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.4e-27 124.0 66 90.9
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.8e-27 123.6 66 89.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.8e-27 123.6 65 92.3
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 9.9e-27 122.9 66 89.4
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 9.9e-27 122.9 66 89.4
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 9.9e-27 122.9 66 89.4
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 9.9e-27 122.9 66 89.4
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 9.9e-27 122.9 62 96.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-26 122.5 65 92.3
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-26 122.1 66 89.4
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.7e-26 122.1 65 89.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.2e-26 121.7 66 89.4
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-26 120.9 66 87.9
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 3.8e-26 120.9 71 88.7
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.4e-26 120.2 62 95.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 6.4e-26 120.2 68 89.7
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 8.4e-26 119.8 61 93.4
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.4e-25 119.0 63 88.9
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-25 119.0 62 93.5
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.9e-25 118.6 68 86.8
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.1e-24 115.2 66 84.8
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 9.6e-22 106.3 66 78.8
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 2.8e-21 104.8 61 82.0
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.0e-20 100.9 69 72.5
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.2e-19 99.4 57 78.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.5e-19 99.0 58 79.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 5.4e-17 90.5 50 80.0
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.6e-16 89.0 47 89.4
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 6.0e-16 87.0 42 95.2
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 5.3e-12 73.9 42 85.7
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.3e-12 73.9 49 77.6


User provided reference genes

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