Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13221 Brassica carinata HOM05D008408 ORTHO05D009173 7.5e-45 183.3 84 100.0
C02p03520 Brassica napus HOM05D008408 ORTHO05D009173 9.5e-40 166.4 84 94.0
BolC2t06311H Brassica oleracea HOM05D008408 ORTHO05D009173 9.5e-40 166.4 84 94.0
BraA02t04950Z Brassica rapa HOM05D008408 ORTHO05D009173 8.9e-38 159.8 84 90.5
C02p03510 Brassica napus HOM05D008408 ORTHO05D009173 3.7e-36 154.5 84 86.9
BolC2t06310H Brassica oleracea HOM05D008408 ORTHO05D009173 3.7e-36 154.5 84 86.9
BcaC03g13220 Brassica carinata HOM05D008408 ORTHO05D009173 3.3e-24 114.8 67 83.6
C09p68620 Brassica napus HOM05D008408 ORTHO05D009173 7.3e-24 113.6 85 62.4
BolC9t59606H Brassica oleracea HOM05D008408 ORTHO05D009173 1.2e-23 112.8 85 62.4
Carub.0008s0682 Capsella rubella HOM05D008408 ORTHO05D009173 1.2e-23 112.8 86 65.1
BraA10t44883Z Brassica rapa HOM05D008408 ORTHO05D009173 2.8e-23 111.7 85 61.2
A10p28360 Brassica napus HOM05D008408 ORTHO05D009173 3.6e-23 111.3 85 61.2
BcaB08g37265 Brassica carinata HOM05D008408 ORTHO05D009173 6.2e-23 110.5 85 61.2
AL6G18730 Arabidopsis lyrata HOM05D008408 ORTHO05D009173 3.1e-22 108.2 85 62.4
AT5G08315 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 8.9e-22 106.7 86 60.5
Thhalv10001718m.g Eutrema salsugineum HOM05D008408 ORTHO05D009173 1.1e-19 99.8 85 58.8
AT5G19315 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 2.4e-19 98.6 85 58.8
Carub.0006s1765 Capsella rubella HOM05D008408 ORTHO05D009173 2.4e-19 98.6 84 60.7
AT5G08055 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 4.1e-19 97.8 86 58.1
Sp4g25680 Schrenkiella parvula HOM05D008408 ORTHO05D009173 5.4e-19 97.4 85 60.0
BNapus_Darmor_BZH_scaffold_38p02640 Brassica napus HOM05D008408 ORTHO05D009173 7.1e-19 97.1 85 54.1
THA.LOC104807177 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 7.1e-19 97.1 85 56.5
AL6G30800 Arabidopsis lyrata HOM05D008408 ORTHO05D009173 9.2e-19 96.7 84 58.3
THA.LOC104807176 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 9.2e-19 96.7 85 54.1
THA.LOC109116535 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 1.6e-18 95.9 85 52.9
THA.LOC109116531 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 4.6e-18 94.4 83 56.6
A02p05470 Brassica napus HOM05D008408 ORTHO05D009173 6.0e-18 94.0 85 52.9
BraA02t05498Z Brassica rapa HOM05D008408 ORTHO05D009173 6.0e-18 94.0 85 52.9
Carub.0008s0683 Capsella rubella HOM05D008408 ORTHO05D009173 6.6e-17 90.5 85 56.5
THA.LOC109116863 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 6.6e-17 90.5 85 52.9
CARHR193650 Cardamine hirsuta HOM05D008408 ORTHO05D009173 3.3e-16 88.2 78 57.7
AT1G33607 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 7.3e-16 87.0 85 51.8
THA.LOC109116906 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 7.3e-16 87.0 86 51.2
Aa31LG11G10380 Aethionema arabicum HOM05D008408 ORTHO05D009173 2.1e-15 85.5 82 50.0
CARHR138690 Cardamine hirsuta HOM05D008408 ORTHO05D009173 4.0e-14 81.3 83 54.2
Aa31LG11G10370 Aethionema arabicum HOM05D008408 ORTHO05D009173 6.4e-12 73.9 85 44.7
CARHR225690 Cardamine hirsuta HOM05D008408 ORTHO05D009173 1.4e-11 72.8 51 62.7
AL7G35410 Arabidopsis lyrata HOM05D008408 ORTHO05D009173 2.4e-11 72.0 78 51.3
Thecc.01G205100 Theobroma cacao HOM05D008282 ORTHO05D009173 3.5e-10 68.2 93 41.9
Carub.0007s2804 Capsella rubella HOM05D008282 ORTHO05D009173 7.8e-10 67.0 87 37.9
BcaNung00027 Brassica carinata HOM05D008408 ORTHO05D009173 1.3e-09 66.2 51 54.9
A01p10130 Brassica napus HOM05D008408 ORTHO05D009173 1.3e-09 66.2 51 58.8
BraA01t00959Z Brassica rapa HOM05D008408 ORTHO05D009173 1.3e-09 66.2 51 58.8
Potri.013G113550 Populus trichocarpa HOM05D008282 ORTHO05D009173 1.3e-09 66.2 61 45.9
Potri.016G130300 Populus trichocarpa HOM05D008282 ORTHO05D009173 1.3e-09 66.2 58 48.3
Thhalv10026696m.g Eutrema salsugineum HOM05D008408 ORTHO05D009173 2.3e-09 65.5 82 45.1
Potri.013G113600 Populus trichocarpa HOM05D008282 ORTHO05D009173 3.9e-09 64.7 81 40.7
Aa31LG11G10360 Aethionema arabicum HOM05D008408 ORTHO05D009173 8.7e-09 63.5 83 42.2
AT5G52605 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 1.9e-08 62.4 88 36.4
CARHR220430 Cardamine hirsuta HOM05D008282 ORTHO05D009173 1.9e-08 62.4 66 40.9
BcaNung02676 Brassica carinata HOM05D029055 ORTHO05D009173 2.5e-08 62.0 52 51.9
C07p50000 Brassica napus HOM05D029055 ORTHO05D009173 2.5e-08 62.0 52 51.9
AT4G14276 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 3.3e-08 61.6 94 34.0
Carub.0007s2805 Capsella rubella HOM05D008282 ORTHO05D009173 3.3e-08 61.6 66 40.9
THA.LOC104804768 Tarenaya hassleriana HOM05D008282 ORTHO05D009173 9.6e-08 60.1 100 39.0
Prupe.6G209700 Prunus persica HOM05D008282 ORTHO05D009173 1.2e-07 59.7 83 43.4
Prupe.6G209800 Prunus persica HOM05D008282 ORTHO05D009173 1.2e-07 59.7 83 43.4
Potri.005G074350 Populus trichocarpa HOM05D008282 ORTHO05D009173 2.1e-07 58.9 89 37.1
Sp6g27730 Schrenkiella parvula HOM05D008408 ORTHO05D016591 2.1e-07 58.9 52 46.2
Gohir.A02G058203 Gossypium hirsutum HOM05D008282 ORTHO05D009173 6.2e-07 57.4 61 42.6
Gohir.D02G064025 Gossypium hirsutum HOM05D008282 ORTHO05D009173 8.1e-07 57.0 61 42.6
Gorai.005G072200 Gossypium raimondii HOM05D008282 ORTHO05D009173 8.1e-07 57.0 61 41.0
Gorai.005G072300 Gossypium raimondii HOM05D008282 ORTHO05D009173 8.1e-07 57.0 61 41.0
Prupe.6G206400 Prunus persica HOM05D008282 ORTHO05D009173 8.1e-07 57.0 83 42.2
Gohir.D02G064050 Gossypium hirsutum HOM05D008282 ORTHO05D009173 1.1e-06 56.6 61 41.0
CARHR216630 Cardamine hirsuta HOM05D008282 ORTHO05D009173 4.0e-06 54.7 48 47.9
Hma1.2p1_0001F.1_g001300 Hydrangea macrophylla HOM05D009110 ORTHO05D011182 5.2e-06 54.3 67 41.8
Prupe.6G206000 Prunus persica HOM05D008282 ORTHO05D009173 6.9e-06 53.9 55 45.5


User provided reference genes

Program Settings